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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_10559.1_33088
Locus scaffold10559.1 : 1 ... 5668 : +
To GenomeBrowser scaffold10559.1:1..5668
Genes list of scaffold scaffold10559.1
Synonym pfu_aug1.0_9778.1_02802

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_10559.1_33088.t1 1 1 GATase_7 5 83 2.7e-17 62.6 1.0e-20 3.9e-17 62.1
pfu_aug2.0_10559.1_33088.t1 1 1 GATase_6 5 76 4.3e-12 46.1 1.5e-15 5.6e-12 45.7

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_10559.1_33088.t1 gi|558122840|ref|XP_006114565.1| PREDICTED: asparagine synthetase [glutamine-hydrolyzing] [Pelodiscus sinensis] 4.06377e-44

Transcript
Transcript IDpfu_aug2.0_10559.1_33088.t1
Definition-
>pfu_aug2.0_10559.1_33088.t1
atttctaaagactttggtttccagagaagaacggagtgtgatagtgaagttatcatacacttatacgtaaaaggtggcat
tgaatttgccgccaaacagttggatggcgtctttgcgttcgtgctgcttgacaccaccaaaagaaaagtttatctcggga
gggacacctttggtatcagacctatgttcaagttacaaaatgcacatggatttatcgctgtttgctcggaggcaaaaggc
ttgttggcatttaaaccagacaaccattcggataaaatagaacctttttctcctggtcaagttgaagcttacgaacttca
acaagacggaaaagcaagatttatagagaagaaaacatttcacacaattggggaagagcctaattacataacaactatat
cttcccttgatggagatgtcggaaagaatcttcgtctgttgctagaggctgctgtgtcaaaaaggttgatgtcggataga
agg

Protein
Protein IDpfu_aug2.0_10559.1_33088.t1
Definition-
>pfu_aug2.0_10559.1_33088.t1
ISKDFGFQRRTECDSEVIIHLYVKGGIEFAAKQLDGVFAFVLLDTTKRKVYLGRDTFGIRPMFKLQNAHGFIAVCSEAKG
LLAFKPDNHSDKIEPFSPGQVEAYELQQDGKARFIEKKTFHTIGEEPNYITTISSLDGDVGKNLRLLLEAAVSKRLMSDR
R

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