Gene
| Gene Model ID | pfu_aug2.0_10588.1_29704 |
|---|---|
| Locus | scaffold10588.1 : 1 ... 5634 : - |
| To GenomeBrowser | scaffold10588.1:1..5634 |
| Genes list of scaffold | scaffold10588.1 |
| Synonym | pfu_aug1.0_15835.1_39747 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10588.1_29704.t1 | 4 | 1 | zf-CCCH | 166 | 187 | 3.3e-15 | 55.3 | 9.6e-11 | 3.6e-07 | 29.7 |
| pfu_aug2.0_10588.1_29704.t1 | 4 | 2 | zf-CCCH | 191 | 212 | 3.3e-15 | 55.3 | 0.00014 | 0.5 | 10.1 |
| pfu_aug2.0_10588.1_29704.t1 | 4 | 3 | zf-CCCH | 217 | 239 | 3.3e-15 | 55.3 | 3.7e-07 | 0.0014 | 18.2 |
| pfu_aug2.0_10588.1_29704.t1 | 4 | 4 | zf-CCCH | 246 | 259 | 3.3e-15 | 55.3 | 0.039 | 150.0 | 2.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10588.1_29704.t1 | gi|585696516|ref|XP_006822215.1| | PREDICTED: zinc finger CCCH domain-containing protein 3-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_10588.1_29704.t1 | gi|524873067|ref|XP_005093287.1| | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_10588.1_29704.t1 | gi|524873063|ref|XP_005093285.1| | PREDICTED: zinc finger CCCH domain-containing protein 3-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_10588.1_29704.t1 | gi|241701703|ref|XP_002413185.1| | ZC3H3 protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_10588.1_29704.t1 | gi|390369232|ref|XP_001187951.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_10588.1_29704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10588.1_29704.t1 attcatgcgctaaactgaacaactatagacagaagtggaagtctggaaacaggtttaggttagacaggagaggggaggcc aagtattctataccgtctattttggatgggcagagactggtgatgattaatggtactgtatataggacaagtaacaaagg acttacagctaccaatccatcaaaacacaggagaagctcgtctttgtggaaaaagttccagagttcaaccacgaaaacaa ttcttgttagaggagtgaagtttcagatggatgccaatgggaagaccctaaaacgactacaatctcatgatggcaaagaa agtacaaaagtgtctcgggtggatcttggtggcatcacttacatacagagaagtcaaggtgtattagaacagctcacagg ctccaactccagggctgctgcaagccaagtcctacatagaagtattcgtacagctacggctaagttcaggaaggacaata caaaactagcacagaaatattgtaaatactacaacaggtttgggagatgtaggcgaggggatcagtgtcagtatatacac gatactacaaagattgcggtctgtacaagattcttaaggggaacttgtaatatcacagactgtccattctcacataatgt cgacaaagacaaaatgcccgtgtgttcgtactacttgaagggcgtgtgtaatcgtgacaactgtccgtatttacatgtaa atgtggacaggaatgctgaaatctgtacagactttgttaatggattctgtccgttaggaatgaagaaaaatgtttctccc ttaatggactgggatatccatggaaaagctgggaaaagatatccttgtcttacccctatgggggcttttagacagtggaa gaaaaataatcaatcctcagttgtgatcagggacaccaaaatccaaccctcatgtccaggatttgcttttgtccacgact cggcaagctttgtcttggtaccagcaaatcttggacatgcgagtaggatttccttgttcctgatcacatctagggataga ttctatttatc |
|
Protein
| Protein ID | pfu_aug2.0_10588.1_29704.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10588.1_29704.t1 SCAKLNNYRQKWKSGNRFRLDRRGEAKYSIPSILDGQRLVMINGTVYRTSNKGLTATNPSKHRRSSSLWKKFQSSTTKTI LVRGVKFQMDANGKTLKRLQSHDGKESTKVSRVDLGGITYIQRSQGVLEQLTGSNSRAAASQVLHRSIRTATAKFRKDNT KLAQKYCKYYNRFGRCRRGDQCQYIHDTTKIAVCTRFLRGTCNITDCPFSHNVDKDKMPVCSYYLKGVCNRDNCPYLHVN VDRNAEICTDFVNGFCPLGMKKNVSPLMDWDIHGKAGKRYPCLTPMGAFRQWKKNNQSSVVIRDTKIQPSCPGFAFVHDS ASFVLVPANLGHASRISLFLITSRDRFYL |
|