Gene
| Gene Model ID | pfu_aug2.0_106.1_20235 |
|---|---|
| Locus | scaffold106.1 : 18536 ... 36215 : - |
| To GenomeBrowser | scaffold106.1:18536..36215 |
| Genes list of scaffold | scaffold106.1 |
| Synonym | pfu_aug1.0_14786.1_10736 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| ga-binding protein alpha chain | GO:0000790 GO:0000978 GO:0001077 GO:0003713 GO:0005654 GO:0007005 GO:0030154 GO:0045944 GO:0046982 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_106.1_20235.t1 | 1 | 1 | GABP-alpha | 117 | 203 | 3.7e-33 | 113.3 | 2.0e-36 | 9.9e-33 | 111.9 |
| pfu_aug2.0_106.1_20235.t1 | 1 | 1 | SAM_PNT | 248 | 328 | 1.0e-26 | 92.4 | 5.9e-30 | 2.9e-26 | 91.0 |
| pfu_aug2.0_106.1_20235.t1 | 2 | 1 | Ets | 271 | 284 | 2.6e-38 | 130.0 | 2.8 | 14000.0 | -3.7 |
| pfu_aug2.0_106.1_20235.t1 | 2 | 2 | Ets | 386 | 468 | 2.6e-38 | 130.0 | 5.20022e-42 | 2.6e-38 | 130.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_106.1_20235.t1 | gi|524893983|ref|XP_005103499.1| | PREDICTED: GA-binding protein alpha chain-like isoform X2 [Aplysia californica] | 0.0 |
| pfu_aug2.0_106.1_20235.t1 | gi|524893985|ref|XP_005103500.1| | PREDICTED: GA-binding protein alpha chain-like isoform X3 [Aplysia californica] | 0.0 |
| pfu_aug2.0_106.1_20235.t1 | gi|524893987|ref|XP_005103501.1| | PREDICTED: GA-binding protein alpha chain-like isoform X4 [Aplysia californica] | 0.0 |
| pfu_aug2.0_106.1_20235.t1 | gi|524893981|ref|XP_005103498.1| | PREDICTED: GA-binding protein alpha chain-like isoform X1 [Aplysia californica] | 0.0 |
| pfu_aug2.0_106.1_20235.t1 | gi|676492511|ref|XP_009065941.1| | hypothetical protein LOTGIDRAFT_222728 [Lottia gigantea] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_106.1_20235.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20235.t1 atggaggatggggacgacactatcacagttaccatgacagaggatggatatctatcaatgtcaacaacacagccagatga ggaaactgatgaacccgaagtcaagaggatacgattagctgcagaggaggaagccgacgccgtggtggccagctctctag atgcctcggtacaggacctagcacaggatgtacaagtccaagaagtccacatagctggtgatttacaggacggtatcata gagggcgctgagggagtggagactcaagtcatatctgcaaatgacggtgtggtttatgaggaggtacaagaacagatcat tgagcagcaagatgcgccatcgtaccagaacctgatcatacagcatatggacatcgccgagcctctctccaccctcaaat ccctcctggaaatgaggcttcagtgctcccttaatgaccatcagttttacctacaagatactatagagcttgatacaact aaaagtctagtagatcagtgtgtgcagggagagggtatggtccagatcaatctagaggtcaaatcacagccaggggtcaa gccaaaaataaacatcgtcgatatacttaaacctgctgatgaagtcgaagctcagcaaaatgaaagtcctgtccctgccc caccccccgtacaggcggcaccccagcagaagaaccccaccaaggtggttatccccctccctgaggaatcagaaaacgtc acaagatggatcgtagatcaacactttaggagggaacaggagcgactcaggataccatttgatccagtgctatggtcaga acttcatgtccggcattggatagagtggggaataaaggaatttaaacttcaaggagtcaacgtagaaaatttccgaataa ccggcaaacaattatgtgagctgacacatccagaatttgttaagttgatccctcatgataaaggagatattttctggacg catctagaacttctcaggaaatgtaaatttgttgctgtgatgcagcagccgaccccacatgccataacaactatcacagt gtcaacgtcagctcaaaatgctcgtgctaaagccttaaagcagaatcggccccgctcgccaaggataacgggagatgata gactgagcccaggaaataggacaggtaacaatggtcagatacagctatggcagtttctcctagagctgcttacggacaaa gactgtagagaggtcatacagtggctcggtgacgaaggcgaattcaaactcaacaatcctgaaatggtggctcaaatgtg ggggcagcgcaagaacaaaccaaccatgaactacgaaaaactcagtcgagcgttacgatactattatgatggagatatga ttgcaaaggttcatgggaaaagatttgtgtacaaatttgtgtgtgaccttaaaatgttattgggatattcagcggcagaa ttaaatcgacaagtggcgatgtgcgcggaaagaaaactacaaagagtacgagagtctatgcgaccaagtcatgtatcaaa aagaattcaagccgtattggacacaaaacctattcttgcaacgacaaactttgtacagaccatggaatga |
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Protein
| Protein ID | pfu_aug2.0_106.1_20235.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20235.t1 MEDGDDTITVTMTEDGYLSMSTTQPDEETDEPEVKRIRLAAEEEADAVVASSLDASVQDLAQDVQVQEVHIAGDLQDGII EGAEGVETQVISANDGVVYEEVQEQIIEQQDAPSYQNLIIQHMDIAEPLSTLKSLLEMRLQCSLNDHQFYLQDTIELDTT KSLVDQCVQGEGMVQINLEVKSQPGVKPKINIVDILKPADEVEAQQNESPVPAPPPVQAAPQQKNPTKVVIPLPEESENV TRWIVDQHFRREQERLRIPFDPVLWSELHVRHWIEWGIKEFKLQGVNVENFRITGKQLCELTHPEFVKLIPHDKGDIFWT HLELLRKCKFVAVMQQPTPHAITTITVSTSAQNARAKALKQNRPRSPRITGDDRLSPGNRTGNNGQIQLWQFLLELLTDK DCREVIQWLGDEGEFKLNNPEMVAQMWGQRKNKPTMNYEKLSRALRYYYDGDMIAKVHGKRFVYKFVCDLKMLLGYSAAE LNRQVAMCAERKLQRVRESMRPSHVSKRIQAVLDTKPILATTNFVQTME |
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