Gene
| Gene Model ID | pfu_aug2.0_106.1_20242 |
|---|---|
| Locus | scaffold106.1 : 144128 ... 171055 : - |
| To GenomeBrowser | scaffold106.1:144128..171055 |
| Genes list of scaffold | scaffold106.1 |
| Synonym | pfu_aug1.0_6931.1_02348 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_106.1_20242.t1 | 2 | 1 | RhoGAP | 433 | 460 | 0.0 | 157.8 | 0.52 | 3900.0 | -2.7 |
| pfu_aug2.0_106.1_20242.t1 | 2 | 2 | RhoGAP | 655 | 805 | 0.0 | 157.8 | 0.0 | 0.0 | 156.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_106.1_20242.t1 | gi|556978758|ref|XP_005996390.1| | PREDICTED: minor histocompatibility protein HA-1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_106.1_20242.t1 | gi|198436703|ref|XP_002130950.1| | PREDICTED: minor histocompatibility protein HA-1 [Ciona intestinalis] | 0.0 |
| pfu_aug2.0_106.1_20242.t1 | gi|585720932|ref|XP_006813177.1| | PREDICTED: rho GTPase-activating protein 29-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_106.1_20242.t1 | gi|632983501|ref|XP_007908678.1| | PREDICTED: minor histocompatibility protein HA-1 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_106.1_20242.t1 | gi|524897316|ref|XP_005105121.1| | PREDICTED: minor histocompatibility protein HA-1-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_106.1_20242.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20242.t1 atgacaaagagttcttctgtcagcagttttagcagtatgtcagataccaaagacggagtgatggatcaggacgatatact taaacttacacaagacgtcaaacatttctctgacggactcgcccaacttaaaactgtgttcagtgaatctgctggctcag aggaggatctcaaggtgcattgtcactcaaagcttggtgaagtgttagcggtattgaagaacatcctgaacagctatcca gcactacaatctacagagctgtttgctgcttcaggtggcctcatatcaaaaatcaaatcttacaattatggaggtcccaa agacacagaggcagaacataacctgtttgaatctatagacacattggcattagcattcagtagcagtgtgtctgactatc tgatgggagatctggataactcatcctcagaaaaggaaaaggaagataaaactaagtcatatgataacttgtcatcatca ccaaacaccaaaacaaaggctatagaatcacagaataatcaggagtatgcaatattgggtcctgaggagatagacagtat cctatccaggttacaggcaggggtagatctggccctacagagggcaaaagcatggtctaaatatatgaaagatatagctt catatattgagaggaaaactcatctagagtcagagttttcaaagaatatacaaaggcttgctcaaggcatgcggccagtt ttaacagaagaggggttcttaccattacaatcagtgtactgtacagtcttatctcaggttagtattgtcccatcttggga tatagagtatgccaacacctgccaggccacacaagttctactacagacacagaaatttgttgaacctttgacagtaagac gagcggagcatgataaagccaggaaaaatatcaaagactcttggatgaaggaatgcaagaaaatgcctttgacagtaaga cgagcggagcatgataaagccaggaaaaatatcaaagactcttggatgaaggaatgcaagaaaatgcaagatgccgttca cagtttacgtaaagctcagaatatgtataacacacgacagcaggagtatgataaagcgcgagagcttgcctgtaagacgg agtctgacatgctcgcccagagtagtagtggggcatcgagtaaggtagacaaacggaaaaaactggaggaggatgccatg cacaaggctgctgaggcagagacgacgtacaaagcttgtgtggcagaggcaaacaacaggcagcaagagctagagaatgt caagggagaacttttggccaaagtacgagagcaaattctacagtgtgatgaagtcattagaaatgtgacagtagagtact ttcatttattacaaacagtcactgctccaatacctgtacagtaccatacactgtatgagaccagtaagcagtatgtaccg ggagtgcaatatggtgagtttgtacgacgactttccctcaccacatccaacttgccaacaacaccagaacaattcacatt tgagccatatatttcctctcatccaagtccaagggagatagataatcgtaaaaccagtactcagtctacagggtcttctt cagaaatgcaatcacaggatgattcaccacagctaattaataggaaagatcggtacagagtgaaggcgtgggcccagggt ttggggccttgtagtgatacagacagtgccagtggtagcagtaaatccctggagtcctcacccagtaatagtccccatcc ctcaggaagacgtaatctagtcaaatctgggtcactggatgacctagaagaaacaaatggtgcagtgcctggtaatatcc tacagatgccagctacggatggagtagatcttcagggaattttacagaggcatggtaggaggaggaacacaacatttggt gtagatttccaggagcaagttcagcactgtaaatcagctgtacctccaatcatcacaaagtgccttaaagaagtagaaaa acggggcatgtctatgaaggggatatacagggtatcaggggttaagagtaaagtagaggggttatgttccaagtttgaga agaatccagagctagtggagttatgtgatgaacatccaaatgtcatatcaaatgtcctaaagctttatttacgacagtta cccgaaccactgtttacattcaagttgtattcaagctttattcaaacagccaaagagaatatggcagggagtataagcat ggaggacacagttcagcgactcggtgatctagcttcgaaactaccatactcaaacttcaaaacctctgctattctgatgc atcatttacacagggtagctgctaaccatgagattaaccagatgacggctagtaaccttggcattgtgtttggaccaaca ctgttacgacccttagagggaactgcaagtcttacatcgcttgttgatacacctcatcaaactagagcagtggaactcat tattgttaatgtacatgagattctaggaccagacagggagcatgagttgataccagcagagacgcctatagaacaactac cttcagacgccaggggtaaagtccacacctcctctcaaccagctttaaccaaagaagcctcacctcggatgtctaagtcc agtaccagttctactgcctctcagccatcccgtgaggagatctttccccctgggggtggtctggaagctatactccctcc caagagttctgatgctgaattttgtttgcctggcagcgctcatactgataaaaaagatgtctctcattcttcgccaagcg tttccgagggctttagccgcatgcttacaggggatgatccggaggagggaaccgagatcaactcggacgaagagttaccc gacaatctgctcccagatttatctcagccttcccagcatgcatcatcagatatggctgaagaagagtcgcatgttacttc gtccagctctgacacaccagatcaaacaaacgcagaaagcaaagatacttcacataccgtgtctgatgatgatctgcatg cattaacatctcaattaaacactgacccagataaaggtatgaagctgtgtagtgtgaatgagttcttaaatttgattgga taa |
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Protein
| Protein ID | pfu_aug2.0_106.1_20242.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20242.t1 MTKSSSVSSFSSMSDTKDGVMDQDDILKLTQDVKHFSDGLAQLKTVFSESAGSEEDLKVHCHSKLGEVLAVLKNILNSYP ALQSTELFAASGGLISKIKSYNYGGPKDTEAEHNLFESIDTLALAFSSSVSDYLMGDLDNSSSEKEKEDKTKSYDNLSSS PNTKTKAIESQNNQEYAILGPEEIDSILSRLQAGVDLALQRAKAWSKYMKDIASYIERKTHLESEFSKNIQRLAQGMRPV LTEEGFLPLQSVYCTVLSQVSIVPSWDIEYANTCQATQVLLQTQKFVEPLTVRRAEHDKARKNIKDSWMKECKKMPLTVR RAEHDKARKNIKDSWMKECKKMQDAVHSLRKAQNMYNTRQQEYDKARELACKTESDMLAQSSSGASSKVDKRKKLEEDAM HKAAEAETTYKACVAEANNRQQELENVKGELLAKVREQILQCDEVIRNVTVEYFHLLQTVTAPIPVQYHTLYETSKQYVP GVQYGEFVRRLSLTTSNLPTTPEQFTFEPYISSHPSPREIDNRKTSTQSTGSSSEMQSQDDSPQLINRKDRYRVKAWAQG LGPCSDTDSASGSSKSLESSPSNSPHPSGRRNLVKSGSLDDLEETNGAVPGNILQMPATDGVDLQGILQRHGRRRNTTFG VDFQEQVQHCKSAVPPIITKCLKEVEKRGMSMKGIYRVSGVKSKVEGLCSKFEKNPELVELCDEHPNVISNVLKLYLRQL PEPLFTFKLYSSFIQTAKENMAGSISMEDTVQRLGDLASKLPYSNFKTSAILMHHLHRVAANHEINQMTASNLGIVFGPT LLRPLEGTASLTSLVDTPHQTRAVELIIVNVHEILGPDREHELIPAETPIEQLPSDARGKVHTSSQPALTKEASPRMSKS STSSTASQPSREEIFPPGGGLEAILPPKSSDAEFCLPGSAHTDKKDVSHSSPSVSEGFSRMLTGDDPEEGTEINSDEELP DNLLPDLSQPSQHASSDMAEEESHVTSSSSDTPDQTNAESKDTSHTVSDDDLHALTSQLNTDPDKGMKLCSVNEFLNLIG |
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