Gene
| Gene Model ID | pfu_aug2.0_106.1_20246 |
|---|---|
| Locus | scaffold106.1 : 218200 ... 244320 : - |
| To GenomeBrowser | scaffold106.1:218200..244320 |
| Genes list of scaffold | scaffold106.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_106.1_20246.t1 | 3 | 1 | LRR_8 | 37 | 89 | 2.3e-18 | 65.6 | 6.4e-10 | 1.9e-06 | 27.5 |
| pfu_aug2.0_106.1_20246.t1 | 3 | 2 | LRR_8 | 55 | 112 | 2.3e-18 | 65.6 | 1.7e-12 | 5.1e-09 | 35.7 |
| pfu_aug2.0_106.1_20246.t1 | 3 | 1 | LRR_4 | 55 | 94 | 8.8e-15 | 53.9 | 2.9e-11 | 8.7e-08 | 31.6 |
| pfu_aug2.0_106.1_20246.t1 | 4 | 1 | LRR_1 | 55 | 75 | 9.8e-07 | 27.9 | 4.8e-05 | 0.14 | 12.2 |
| pfu_aug2.0_106.1_20246.t1 | 3 | 3 | LRR_8 | 78 | 135 | 2.3e-18 | 65.6 | 6.7e-10 | 2.0e-06 | 27.4 |
| pfu_aug2.0_106.1_20246.t1 | 3 | 2 | LRR_4 | 79 | 112 | 8.8e-15 | 53.9 | 4.6e-09 | 1.4e-05 | 24.6 |
| pfu_aug2.0_106.1_20246.t1 | 4 | 2 | LRR_1 | 79 | 98 | 9.8e-07 | 27.9 | 1.5e-05 | 0.044 | 13.7 |
| pfu_aug2.0_106.1_20246.t1 | 3 | 3 | LRR_4 | 101 | 136 | 8.8e-15 | 53.9 | 1.7e-08 | 5.1e-05 | 22.7 |
| pfu_aug2.0_106.1_20246.t1 | 4 | 3 | LRR_1 | 101 | 122 | 9.8e-07 | 27.9 | 0.0022 | 6.6 | 7.1 |
| pfu_aug2.0_106.1_20246.t1 | 4 | 4 | LRR_1 | 124 | 138 | 9.8e-07 | 27.9 | 0.0054 | 16.0 | 6.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_106.1_20246.t1 | gi|571539046|ref|XP_006562652.1| | PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform X3 [Apis mellifera] | 0.0 |
| pfu_aug2.0_106.1_20246.t1 | gi|572299403|ref|XP_006615834.1| | PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform X7 [Apis dorsata] | 0.0 |
| pfu_aug2.0_106.1_20246.t1 | gi|572299405|ref|XP_006615835.1| | PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform X8 [Apis dorsata] | 0.0 |
| pfu_aug2.0_106.1_20246.t1 | gi|571539057|ref|XP_006562655.1| | PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform X6 [Apis mellifera] | 0.0 |
| pfu_aug2.0_106.1_20246.t1 | gi|572299397|ref|XP_006615831.1| | PREDICTED: CCR4-NOT transcription complex subunit 6-like isoform X4 [Apis dorsata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_106.1_20246.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20246.t1 atgcctcgtgataagtatgaaaagtatgattctccaaatccacgacgggcacatacgtttatgtctgcagaagacgtagc agcgggcaaaaaatcatcatggtttgaattagagataacaggcagcgtacggaatttatgtccagacttatggaaactcc agcatctaacatcactgtatctgaactccaacagcatttcacgtctccctccagaaataaacaaattgtcattactcatg tacctcgatctgtcatgtaacaaactacgaagcctgccagcggaactcggagatctgtctcaactcagggagctacttct caacaataatctcctacgtattctaccatatgaacttgggaagttatttaacctccaaacactaggtctgaagggtaacc cattgtcaccagaagtcttaagcatatacaattctcaaaatggcacacagaagctacttagctttatgctcgacaacttg gcagccacaggagaccagtgtgagtaa |
|
Protein
| Protein ID | pfu_aug2.0_106.1_20246.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_106.1_20246.t1 MPRDKYEKYDSPNPRRAHTFMSAEDVAAGKKSSWFELEITGSVRNLCPDLWKLQHLTSLYLNSNSISRLPPEINKLSLLM YLDLSCNKLRSLPAELGDLSQLRELLLNNNLLRILPYELGKLFNLQTLGLKGNPLSPEVLSIYNSQNGTQKLLSFMLDNL AATGDQCE |
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