Gene
| Gene Model ID | pfu_aug2.0_1060.1_01357 |
|---|---|
| Locus | scaffold1060.1 : 148607 ... 158735 : - |
| To GenomeBrowser | scaffold1060.1:148607..158735 |
| Genes list of scaffold | scaffold1060.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1060.1_01357.t1 | 2 | 1 | Ldl_recept_a | 48 | 73 | 2.7e-12 | 46.3 | 1.3e-06 | 0.0064 | 16.3 |
| pfu_aug2.0_1060.1_01357.t1 | 2 | 2 | Ldl_recept_a | 85 | 117 | 2.7e-12 | 46.3 | 1.8e-12 | 8.9e-09 | 35.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1060.1_01357.t1 | gi|617512777|ref|XP_007543034.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Poecilia formosa] | 2.0e-12 |
| pfu_aug2.0_1060.1_01357.t1 | gi|658904447|ref|XP_008434958.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Poecilia reticulata] | 2.0e-12 |
| pfu_aug2.0_1060.1_01357.t1 | gi|657595495|ref|XP_008302411.1| | PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2-like [Stegastes partitus] | 2.0e-11 |
| pfu_aug2.0_1060.1_01357.t1 | gi|657752924|ref|XP_008311943.1| | PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 2-like [Cynoglossus semilaevis] | 3.0e-11 |
| pfu_aug2.0_1060.1_01357.t1 | gi|551522607|ref|XP_005812791.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Xiphophorus maculatus] | 3.0e-11 |
Transcript
| Transcript ID | pfu_aug2.0_1060.1_01357.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1060.1_01357.t1 atgttctataatacagggattatgccagggataataaaatggatcgttttattcatatgcacgaaaggatattctgctga tactgatgcaggggaacaaagctgtcctacaaggatgcggtcatgtgatatattcgcgccaaactccacgtgcatatggg atatccagacatgtgatggagaagttgattgtcataataacaacgaggaaagaaactgtccctacaggataccctgtaat actgtgtatgggaaggagggatttctttgtgacaatggcgagtgtacactgaagtattggttctgtgatggtacggagga ttgtagtgacgggtctgatgaggcattatgtaattctaccatttgggaacaaggtgtgagtgatgttgtcagcaaacagc ttctggccgccacttgtaatcactgggtttactaccaatgtggctttaaatatcctacagacttcttacaatggaagact tgggacgaaataaagggatacgtctggacgaaacaagatttcgacaatatttgcagtgatattgcggctacaatacaatg tgtcaagcagcacgtccctcagtgttttggctttgaagaaggattggttttctatgaccatgtgtataatatcctgtgtc tgcctccaaatatcacatttgctaaagccctcctaccttgtttcaatgacgcttcaacacaaattgccttaagatattac tcgaccttaacacaaaaatggaatttctatggaccgggaagtaaagagaaacccaaaatggatgtcaaatattcgttatg tttacacaatttcattacgtttgagaatgtcatactgggcatcattgatcagaactgtcagaagatatggactaatctca tagtcaaaggcttggcctacaggataaaggaacctgtgataaggaaatatgggaactttgagaaagacctgtgtaatgcc agaatcttccgcgaggacaagtgggacgggtatatcaatcccgtcttgaaattcgatgactggcaattgagaaaacttca gagtggacagttaccttag |
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Protein
| Protein ID | pfu_aug2.0_1060.1_01357.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1060.1_01357.t1 MFYNTGIMPGIIKWIVLFICTKGYSADTDAGEQSCPTRMRSCDIFAPNSTCIWDIQTCDGEVDCHNNNEERNCPYRIPCN TVYGKEGFLCDNGECTLKYWFCDGTEDCSDGSDEALCNSTIWEQGVSDVVSKQLLAATCNHWVYYQCGFKYPTDFLQWKT WDEIKGYVWTKQDFDNICSDIAATIQCVKQHVPQCFGFEEGLVFYDHVYNILCLPPNITFAKALLPCFNDASTQIALRYY STLTQKWNFYGPGSKEKPKMDVKYSLCLHNFITFENVILGIIDQNCQKIWTNLIVKGLAYRIKEPVIRKYGNFEKDLCNA RIFREDKWDGYINPVLKFDDWQLRKLQSGQLP |
|