Gene
| Gene Model ID | pfu_aug2.0_1060.1_01358 |
|---|---|
| Locus | scaffold1060.1 : 163616 ... 176830 : + |
| To GenomeBrowser | scaffold1060.1:163616..176830 |
| Genes list of scaffold | scaffold1060.1 |
| Synonym | pfu_aug1.0_17844.1_54442 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1060.1_01358.t1 | 3 | 1 | Ldl_recept_a | 17 | 28 | 1.8e-06 | 27.7 | 0.14 | 2000.0 | -1.3 |
| pfu_aug2.0_1060.1_01358.t1 | 3 | 2 | Ldl_recept_a | 36 | 63 | 1.8e-06 | 27.7 | 1.2e-10 | 1.8e-06 | 27.7 |
| pfu_aug2.0_1060.1_01358.t1 | 3 | 3 | Ldl_recept_a | 75 | 86 | 1.8e-06 | 27.7 | 0.067 | 1000.0 | -0.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1060.1_01358.t1 | gi|751231365|ref|XP_011169237.1| | PREDICTED: uncharacterized protein LOC105202421 isoform X2 [Solenopsis invicta] | 6.0e-06 |
| pfu_aug2.0_1060.1_01358.t1 | gi|291229642|ref|XP_002734783.1| | PREDICTED: low-density lipoprotein receptor-related protein 2-like [Saccoglossus kowalevskii] | 7.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1060.1_01358.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1060.1_01358.t1 atgtttgtgaacggtgatagagaaaaatacatgaatcttataaaaattgattgctggtcatggtcaagtgaaagactgga gtgtatgacagcactgggactggaggggtacctctgtaacaacggagagtgcatgataaaggagtggtattgtgacggta tgatagactgcctggacagaagcgacgaaatttgtactccaacaagtttacaggaagagcatgccgcatgtcaagctaag ttacgtcaatgtgacttccaaaatccatactccattataccaaagccagaaaatggggaggtagttccaagtcacgtaga cgccttctgcaaaaaatcagaacccgaaggcatgcaaaatcaggacaaaacagaaaccaaagcaaacaaacaaaaacctc caccacatgaaaagaaacgaactcccgacatcagagtgagaccaggtgtccaggaagagtaa |
|
Protein
| Protein ID | pfu_aug2.0_1060.1_01358.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1060.1_01358.t1 MFVNGDREKYMNLIKIDCWSWSSERLECMTALGLEGYLCNNGECMIKEWYCDGMIDCLDRSDEICTPTSLQEEHAACQAK LRQCDFQNPYSIIPKPENGEVVPSHVDAFCKKSEPEGMQNQDKTETKANKQKPPPHEKKRTPDIRVRPGVQEE |
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