Gene
| Gene Model ID | pfu_aug2.0_107.1_23457 |
|---|---|
| Locus | scaffold107.1 : 23936 ... 37289 : + |
| To GenomeBrowser | scaffold107.1:23936..37289 |
| Genes list of scaffold | scaffold107.1 |
| Synonym | pfu_aug1.0_4397.1_16387 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| carnitine-acylcarnitine carrier | GO:0006810 GO:0016021 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_107.1_23457.t1 | 3 | 1 | Mito_carr | 20 | 98 | 3.6e-33 | 113.1 | 3.0e-21 | 4.5e-17 | 61.5 |
| pfu_aug2.0_107.1_23457.t1 | 3 | 2 | Mito_carr | 118 | 161 | 3.6e-33 | 113.1 | 6.7e-07 | 0.01 | 15.5 |
| pfu_aug2.0_107.1_23457.t1 | 3 | 3 | Mito_carr | 190 | 274 | 3.6e-33 | 113.1 | 2.3e-13 | 3.4e-09 | 36.2 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_107.1_23457.t1 | gi|156356465|ref|XP_001623943.1| | predicted protein [Nematostella vectensis] | 0.0 |
| pfu_aug2.0_107.1_23457.t1 | gi|240995037|ref|XP_002404567.1| | carnitine-acylcarnitine carrier protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_107.1_23457.t1 | gi|676424474|ref|XP_009044238.1| | hypothetical protein LOTGIDRAFT_152560 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_107.1_23457.t1 | gi|340380117|ref|XP_003388570.1| | PREDICTED: mitochondrial substrate carrier family protein S-like [Amphimedon queenslandica] | 0.0 |
| pfu_aug2.0_107.1_23457.t1 | gi|553184811|ref|XP_005854150.1| | hypothetical protein NGA_0198700 [Nannochloropsis gaditana CCMP526] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_107.1_23457.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23457.t1 atgacacacaatgaagagagaagccactggctacgagagggagccatcggacttggagttggtgtgttatatggagtaac caatgtatgtgtgggtcatccttttgacaccctaaaaaccaagatgcaggctcaggttggatacgagaaaaccaacatgg cccaaacactgctgaaaacattacgacagcaaggagtggttggattgtacagaggctgtattccaccactttggggttct ggtatatatagatctactcagtttgctgtctttgaagccatgtacaccaagtttgatcatccagcaggaagatatgaaat tcctggatctgctggccttcaactacgtgtggtgggagcaggtatgattgcctcaacagccagagctattatagaaacac cgctagaatatgctaaagttcgcagacaaatacagcaaacatggaagctaagagaggtttatacaggctttggtgtgaca tggtgccgtactatgggtctaatgacaacctactttatattggtggattctggcaggagacatttcccagaacaatttaa gaagcctctgattggtccattcttaacctctggtattgcagcaactctagcctggtggattgtctggcctttagagtaca tgaaatgccaagtacaatgtgattatggaaagcgtgtatctgtgatagagagaatgaagatcattgtgagagagcgaggt ggattttttgccttgtatcgtgggattctacctggaacaatacgaagcttccttgccaatggaacgagcatggtggttat gtctttcgctcaacgaaaagttacagaactaggactgcgctcaaagtaa |
|
Protein
| Protein ID | pfu_aug2.0_107.1_23457.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23457.t1 MTHNEERSHWLREGAIGLGVGVLYGVTNVCVGHPFDTLKTKMQAQVGYEKTNMAQTLLKTLRQQGVVGLYRGCIPPLWGS GIYRSTQFAVFEAMYTKFDHPAGRYEIPGSAGLQLRVVGAGMIASTARAIIETPLEYAKVRRQIQQTWKLREVYTGFGVT WCRTMGLMTTYFILVDSGRRHFPEQFKKPLIGPFLTSGIAATLAWWIVWPLEYMKCQVQCDYGKRVSVIERMKIIVRERG GFFALYRGILPGTIRSFLANGTSMVVMSFAQRKVTELGLRSK |
|