Gene
| Gene Model ID | pfu_aug2.0_107.1_23462 |
|---|---|
| Locus | scaffold107.1 : 115847 ... 133405 : - |
| To GenomeBrowser | scaffold107.1:115847..133405 |
| Genes list of scaffold | scaffold107.1 |
| Synonym | pfu_aug1.0_189285.1_21436 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_107.1_23462.t1 | 1 | 1 | RNase_T | 1111 | 1257 | 3.3e-23 | 82.7 | 4.9e-27 | 7.2e-23 | 81.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_107.1_23462.t1 | gi|676436469|ref|XP_009047893.1| | hypothetical protein LOTGIDRAFT_111751, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_107.1_23462.t1 | gi|698438541|ref|XP_009816655.1| | PREDICTED: RNA exonuclease 1 homolog, partial [Gavia stellata] | 0.0 |
| pfu_aug2.0_107.1_23462.t1 | gi|700392427|ref|XP_009936638.1| | PREDICTED: RNA exonuclease 1 homolog [Opisthocomus hoazin] | 0.0 |
| pfu_aug2.0_107.1_23462.t1 | gi|697435568|ref|XP_009683406.1| | PREDICTED: RNA exonuclease 1 homolog isoform X1 [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_107.1_23462.t1 | gi|706138645|ref|XP_010202449.1| | PREDICTED: RNA exonuclease 1 homolog, partial [Colius striatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_107.1_23462.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23462.t1 atgttcaacaacggtggctactttcgaggtgtttcctgtccattttatgcaagtggtctgtgtgagcgaccgtattgtca ttttcgacatgtaaaaactgaagaagaacacaacacagggaggagaggaggttcatatgttgagagcctgtcagagaaat cttggcttggtcccacaggatcttatataaataacacttgtgaaaatgctaatggacaagggataagaataaacaaatac actggcaaaccagagcctgtcacaggacctgaggagtaccaaatccctcatactgtttccgtcaagtatgatataaatgg ggtcaatgtcaacaaatacactggtcaacctattaggtccaccaaacccgaggaataccaagtggagggtagtggatatg gtaataccaaggtagtaggacatgaggaatatcacatccctggaacaggatatgggggacctaatggtaaattaactcag cctgaagaatatgaaatacatggtagtgggtatggaaatcataccggaaaacaacgatcaaataaactggaagaatactc agtagagggaagtggatatgggaaatgtgttaattctcctgttatagaggaatatcaagtggatggtgaaggatacggta aattcaaagacaaaatgaagaagatgaaggaatccaaacttcatagtgccaaacctgatagtaaatctgggatctgtcct gaatacaaccctactcctattgataaactaaaacctggcaatgaaagtgctaaatacacaacagaagattcctcagtccc atgctctgaacaagaatatgatccaatgaaaaatttctcaacgggtctcggtcttaatttgcataaaactggccctgtta agaggacatacagttatgatccgacaaaacctaattttggctgtccaaagaagaaagtgaaattaggaaaagacaaaggt ggtcttccaaaatttggtgaatctgaatctgaggatgacggtgaaatcggagcgtttagtgaagaggaggaggaggttaa ggaggaggcatcagctgatatggaggaagaggaggatgacagtgaggaagaggacaaacctgctctgattactgatgtca aggtctttgaaagtctgctcatggactcaaaagatttagaggaagataaggagaaaatgttgtctacagatgcagagagt gatcagaaatctgaatctttagagagtgataaacagcaacaaagtgtcaaatcaaagactaaagaggataacactaaaag cagtcctaaatcaaagttagatggtagtcatagtagagacagaggaattttcaaggcattagcaaaactgagtgatacta tgtccaagatgaagaaaagtgaccttttcagtaagaacttaggaataaaagattcaagtgcatctacctctcacaaaaac gatgattcaactagccattctaaagaagacaaaatatcttcatcaaaatcagataacaaaaaaagccataaatcttcatc atcatcttcatccagcaaggacaaatcatcatcaacgcataaatcattaaaggaaaaatcattgtccaaagagaaatctt cttccaaagaatcctcctcatcaaaagaaaaatcatcttcatcaaagaaatcttcatcaaaggacagatcttcatccaag gacaaatcttcattgaaatccatatcaactggtgaaaaatccagtagcaaatcatccaaagagcataatacttcatcaaa gcatcgatcctcatcatcttcaaaacacaaatcatcctcaaggtcatcacactcttcctctcataaagacaaacatgata aagataaacatgataaagataaacataccggtaaatcagaagatagaaatcataaacatcacaagtctagtggcagtaac aaacaccattcaagtgaaaaacacagtgataaagtgaaatgtgataaaaatgcttcgcaatctcatcataattcctccaa atcgagggaaagaaagtctagtaatcaggaaagacgtgactctacagattcatcccatagtaggagatcatcagtagata aacagaaaatagtggatttaaacgtgaatctgtttggagaggatagcgagaatgagcctgatgaagtgggggtgatgtca gacttctctgacgatagcgatttggttagtgaggaggacttggtggcagaggatccctatgaggaatgcctcaagatctt caaggaaaatgccaccaagcttaactacactgcaaagaaatccttcacaaagaaatttgagaagaaagaagaagagttgc cagtggttgtcgggaagaaaagaacggctcacaaaactgatgtggaggttaagagaaaagttccagagaggcctttttcc aaactttcacctgcccaggtcatgcataatcgattcttagcaatacagaaagctgcactggaggcagaaaagacagccga gaaggacaaagctattccctctacatcaacatcatctgatagtagtgggggaaagaagagagtggcaccaagcgcatttt ctgctgcagcttgtggaacaagggtagtggatggaaagactgtgatggccacagcatctaagtccaacaagaggaaagca cacactcctaatgtgggtcaggaggaggagtctgttgtatatagtcgcagcactagtaagacggtataccttaacgtcgc tatcaacaccattaaaagattacgtaacgaggcatcggaaaactcaccgtccaaagccaaaaaggtgtcaccaatgaaga tatctcatgaggcagtcctcggagggaaaaatgctgtccgtaatacctatactctcaatagatctgcttcggttaatgtt gcagaaatcttcaaaggtgcagaattatacaaaagattggagagatacattttgaaagaagaacaattaaaagaaaatgg cttccctcgaactgaccctgatgactcttccaaagtcaaactgtacactgagagcttggcacaacaaaacagtgctaaac ttaaattacatgagaagatctgtagtcgatgtggtaagaggtttatggtgttccctaatggtacatacgccaacaaggag gagtgtacttatcactggggaaaggcttggaaaaagaaaattgctggtgctatagacactcggtatacatgttgtcaagg tgatttggggtcagaaggttgtcagattgctcagtaccatgtacacgagacaaacaagtgggagaaccttagtggtttta tgaagaccattccctgctcaccgagtctagacggagattacggggtgtatgctatggattgtgaaatggtgtacactcaa ggtggaatagaattggctagagtgacggtaatcgatcaagacaatgccagtgtgtacgaaacacttgtaagacctgacag aaaggtcatagactacaacacaagattcagtggaataaccaaggaagacatgcgtgacgtacgaacatctcttagagacg tacaagccgtacttctgagtctcttcacagataaaaccattctagttggtcacagcttggaaagtgatctttttgctgta aagctgatacataatacagtggtagatacatcagttgtgtttccacatagactggggcctccttataaacgagctctgaa aactctgatggcagaatacctcaagaagattatacaagatgatgtggaaggacatgacagtagagaggatgctgtggctt gtatggatttaatgcgctggagggtaaaagaagatgccaagaaagaaagacatctgtga |
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Protein
| Protein ID | pfu_aug2.0_107.1_23462.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23462.t1 MFNNGGYFRGVSCPFYASGLCERPYCHFRHVKTEEEHNTGRRGGSYVESLSEKSWLGPTGSYINNTCENANGQGIRINKY TGKPEPVTGPEEYQIPHTVSVKYDINGVNVNKYTGQPIRSTKPEEYQVEGSGYGNTKVVGHEEYHIPGTGYGGPNGKLTQ PEEYEIHGSGYGNHTGKQRSNKLEEYSVEGSGYGKCVNSPVIEEYQVDGEGYGKFKDKMKKMKESKLHSAKPDSKSGICP EYNPTPIDKLKPGNESAKYTTEDSSVPCSEQEYDPMKNFSTGLGLNLHKTGPVKRTYSYDPTKPNFGCPKKKVKLGKDKG GLPKFGESESEDDGEIGAFSEEEEEVKEEASADMEEEEDDSEEEDKPALITDVKVFESLLMDSKDLEEDKEKMLSTDAES DQKSESLESDKQQQSVKSKTKEDNTKSSPKSKLDGSHSRDRGIFKALAKLSDTMSKMKKSDLFSKNLGIKDSSASTSHKN DDSTSHSKEDKISSSKSDNKKSHKSSSSSSSSKDKSSSTHKSLKEKSLSKEKSSSKESSSSKEKSSSSKKSSSKDRSSSK DKSSLKSISTGEKSSSKSSKEHNTSSKHRSSSSSKHKSSSRSSHSSSHKDKHDKDKHDKDKHTGKSEDRNHKHHKSSGSN KHHSSEKHSDKVKCDKNASQSHHNSSKSRERKSSNQERRDSTDSSHSRRSSVDKQKIVDLNVNLFGEDSENEPDEVGVMS DFSDDSDLVSEEDLVAEDPYEECLKIFKENATKLNYTAKKSFTKKFEKKEEELPVVVGKKRTAHKTDVEVKRKVPERPFS KLSPAQVMHNRFLAIQKAALEAEKTAEKDKAIPSTSTSSDSSGGKKRVAPSAFSAAACGTRVVDGKTVMATASKSNKRKA HTPNVGQEEESVVYSRSTSKTVYLNVAINTIKRLRNEASENSPSKAKKVSPMKISHEAVLGGKNAVRNTYTLNRSASVNV AEIFKGAELYKRLERYILKEEQLKENGFPRTDPDDSSKVKLYTESLAQQNSAKLKLHEKICSRCGKRFMVFPNGTYANKE ECTYHWGKAWKKKIAGAIDTRYTCCQGDLGSEGCQIAQYHVHETNKWENLSGFMKTIPCSPSLDGDYGVYAMDCEMVYTQ GGIELARVTVIDQDNASVYETLVRPDRKVIDYNTRFSGITKEDMRDVRTSLRDVQAVLLSLFTDKTILVGHSLESDLFAV KLIHNTVVDTSVVFPHRLGPPYKRALKTLMAEYLKKIIQDDVEGHDSREDAVACMDLMRWRVKEDAKKERHL |
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