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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_107.1_23475
Locus scaffold107.1 : 346750 ... 351916 : +
To GenomeBrowser scaffold107.1:346750..351916
Genes list of scaffold scaffold107.1
Synonym pfu_aug1.0_4475.1_59526

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_107.1_23475.t1 4 1 Ig_2 33 65 2.2e-13 50.1 0.00074 1.6 8.9
pfu_aug2.0_107.1_23475.t1 4 1 C1-set 34 46 1.5e-06 28.0 1.2 2500.0 -1.5
pfu_aug2.0_107.1_23475.t1 4 1 I-set 35 61 2.1e-13 49.8 0.037 79.0 3.2
pfu_aug2.0_107.1_23475.t1 4 1 Ig_3 35 54 6.5e-08 32.9 0.042 88.0 3.7
pfu_aug2.0_107.1_23475.t1 4 1 C2-set_2 38 47 5.9e-25 86.9 2.4 5000.0 -2.6
pfu_aug2.0_107.1_23475.t1 4 2 Ig_3 73 115 6.5e-08 32.9 2.8e-05 0.058 13.8
pfu_aug2.0_107.1_23475.t1 4 2 Ig_2 78 115 2.2e-13 50.1 1.2e-06 0.0024 17.9
pfu_aug2.0_107.1_23475.t1 4 2 C2-set_2 83 157 5.9e-25 86.9 1.4e-10 3.0e-07 30.2
pfu_aug2.0_107.1_23475.t1 4 2 I-set 83 171 2.1e-13 49.8 1.6e-05 0.033 14.0
pfu_aug2.0_107.1_23475.t1 4 2 C1-set 88 157 1.5e-06 28.0 0.02 42.0 4.2
pfu_aug2.0_107.1_23475.t1 4 3 I-set 191 269 2.1e-13 49.8 0.00014 0.3 10.9
pfu_aug2.0_107.1_23475.t1 4 3 Ig_2 191 264 2.2e-13 50.1 0.0052 11.0 6.2
pfu_aug2.0_107.1_23475.t1 4 3 C2-set_2 192 264 5.9e-25 86.9 2.2e-15 4.7e-12 45.6
pfu_aug2.0_107.1_23475.t1 4 3 Ig_3 194 258 6.5e-08 32.9 0.0028 6.0 7.4
pfu_aug2.0_107.1_23475.t1 4 3 C1-set 206 264 1.5e-06 28.0 9.2e-07 0.002 18.1
pfu_aug2.0_107.1_23475.t1 4 4 Ig_2 281 329 2.2e-13 50.1 2.9e-05 0.061 13.4
pfu_aug2.0_107.1_23475.t1 4 4 Ig_3 281 334 6.5e-08 32.9 0.0014 3.0 8.4
pfu_aug2.0_107.1_23475.t1 4 4 I-set 288 354 2.1e-13 49.8 1.8e-06 0.0038 17.0
pfu_aug2.0_107.1_23475.t1 4 4 C2-set_2 312 353 5.9e-25 86.9 0.003 6.3 6.7
pfu_aug2.0_107.1_23475.t1 4 4 C1-set 314 330 1.5e-06 28.0 0.2 420.0 1.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_107.1_23475.t1 gi|759041824|ref|XP_011329745.1| PREDICTED: hemicentin-2-like [Cerapachys biroi] 4.0e-17
pfu_aug2.0_107.1_23475.t1 gi|195399952|ref|XP_002058583.1| GJ14505 [Drosophila virilis] 3.0e-16
pfu_aug2.0_107.1_23475.t1 gi|350411099|ref|XP_003489239.1| 5.0e-16
pfu_aug2.0_107.1_23475.t1 gi|340714515|ref|XP_003395773.1| 5.0e-16
pfu_aug2.0_107.1_23475.t1 gi|662197178|ref|XP_008471655.1| PREDICTED: neural cell adhesion molecule 1-like [Diaphorina citri] 1.0e-15

Transcript
Transcript IDpfu_aug2.0_107.1_23475.t1
Definition-
>pfu_aug2.0_107.1_23475.t1
atgtcactggtttatcataagtgttgtgtgtctgtatgccttttgatcttatttcttacatgggatacagcagcttccac
tgctagggtatatccagcagttcttggcagctctgtgactttagagtgttcggttagacaagaagacaagctagtgtggg
accgtggtgacggcagtantaacgataaaaaaaactgcatcgttttgttagagccaccgtatgtatggtctacgggtcca
aatgggattatagaggagggtacaaaacaagttttcacatgtacggcagacggagggaaaccccctcccaatatggagtg
gattctaatagatcgaaaagccaatcggaaatcgttcattgggttaaacacagaccatcgatacaccaatggaacataca
gacgaacaaacagacttgaaattataacgtcacgtgacatgtacagagcctccatgatatgcaaggtgtcaatttcgtac
ttttatcaagttcaacaaaccatagtgctggacgtaaacttgtacccattggcgccaaaattcacggatttcacaggatt
atttgacgatggacgagtccacaatatcgaatgttacagtacaggaagtcgtccagctggctccatctactggcaaatcg
acggtaaccctgtatcttctacagctgactctacgacaaagggcaccgatggactattttatcaaagttctaccttgtcg
atgagactcacgaaaaatatccaaggtcaaatgctaaaatgtctggtaaccaatcaagtcctacaaaaccagcagaaacc
tgatctgttcgtccaagtaatgcttttagcaaattttgcaccaagtattgttgctgacaatggttcgcgatcggtcattg
aagacaatgacgtcatcatgacatgcgatgttgacgcaagaccattacctgtagcaggacaatttatttgggttcataac
ggcaatccaatcacatctaacagtgtatacaatatcacaaatgatgtgttgtccgtatcaaaaatgacctccactctaca
catttctccagtttctaaaaaaaatctagaggcccaaaagatgaatgactttaatgatgaagagcgactagccggagaga
aagagaatgaatacagctatgatcatctagggtatttttaa

Protein
Protein IDpfu_aug2.0_107.1_23475.t1
Definition-
>pfu_aug2.0_107.1_23475.t1
MSLVYHKCCVSVCLLILFLTWDTAASTARVYPAVLGSSVTLECSVRQEDKLVWDRGDGSXNDKKNCIVLLEPPYVWSTGP
NGIIEEGTKQVFTCTADGGKPPPNMEWILIDRKANRKSFIGLNTDHRYTNGTYRRTNRLEIITSRDMYRASMICKVSISY
FYQVQQTIVLDVNLYPLAPKFTDFTGLFDDGRVHNIECYSTGSRPAGSIYWQIDGNPVSSTADSTTKGTDGLFYQSSTLS
MRLTKNIQGQMLKCLVTNQVLQNQQKPDLFVQVMLLANFAPSIVADNGSRSVIEDNDVIMTCDVDARPLPVAGQFIWVHN
GNPITSNSVYNITNDVLSVSKMTSTLHISPVSKKNLEAQKMNDFNDEERLAGEKENEYSYDHLGYF

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