Gene
| Gene Model ID | pfu_aug2.0_107.1_23478 |
|---|---|
| Locus | scaffold107.1 : 373588 ... 386385 : - |
| To GenomeBrowser | scaffold107.1:373588..386385 |
| Genes list of scaffold | scaffold107.1 |
| Synonym | pfu_aug1.0_60933.1_34664 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| replication protein a 32 kda subunit | GO:0003677 GO:0005515 GO:0005736 GO:0006281 GO:0006310 GO:0007566 GO:0009303 GO:0009790 GO:0016740 GO:0017126 GO:0065007 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_107.1_23478.t2 | 2 | 1 | RPA_C | 18 | 26 | 7.4e-17 | 61.6 | 0.86 | 6400.0 | -2.4 |
| pfu_aug2.0_107.1_23478.t2 | 2 | 2 | RPA_C | 138 | 234 | 7.4e-17 | 61.6 | 1.0e-20 | 7.5e-17 | 61.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_107.1_23478.t2 | gi|524884814|ref|XP_005099023.1| | PREDICTED: replication protein A 32 kDa subunit-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_107.1_23478.t2 | gi|684401987|ref|XP_009173326.1| | hypothetical protein T265_14751 [Opisthorchis viverrini] | 0.0 |
| pfu_aug2.0_107.1_23478.t2 | gi|742243892|ref|XP_010863473.1| | PREDICTED: replication protein A 32 kDa subunit [Esox lucius] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_107.1_23478.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23478.t1 atgtggaacaataataaaggatttcaaggctacaaccaagaccaaggccagagctttaaccagggtggaggttatatgtc cccaggaggatttggtacccctcaggcttctcagggagacagaaagtctcggtccaggcttcagaacattctaccctgca cgattgcagaaatcatcaatgctagccatacagatgacaaattttacactggagacattgagctttcacaggtaacgtta gtcggactcatcacggcagtaaaggagactcccacacgtattgattatgaagtagacgacaaatcaggacctccactaga agtcaaacattttgttgacaatgatgatgatgtacctgtagcagagagggtccagccattgagggaaaatacatacgtca gagtatatgggaatgtacggtcctttggtgggaagcgaaatgtcgtagcctttaaaattctacctgtgatggacatgaac gagattacgtatcacatgttggaggtgacatacagtcatcttgtgttgtcaaaacagtcaaatgggaatgtagatggtgg aggaggtggacagtctgtgtcatatggtggaggggactatagtaactctgatggagggggaatggtcagtggtctcaatc ctatacaaaaccaggttcatatgattattcgaggaaatgtgacagaggaaggtgctagcattgagtctgtgtgtaagcag ttacgaggggtaccagagaggagtatcagggaagccttggaattcctgagcagtgaagggcacatttactccaccataga tgaggaccatttcaaggcaacggacagctaa |
|
| Transcript ID | pfu_aug2.0_107.1_23478.t2 |
| Definition | - |
>pfu_aug2.0_107.1_23478.t2 atgtggaacaataataaaggatttcaaggctacaaccaagaccaaggccagagctttaaccagggtggaggttatatgtc cccaggaggatttggtacccctcaggcttctcagggagacagaaaggtaacgttagtcggactcatcacggcagtaaagg agactcccacacgtattgattatgaagtagacgacaaatcaggacctccactagaagtcaaacattttgttgacaatgat gatgatgtacctgtagcagagagggtccagccattgagggaaaatacatacgtcagagtatatgggaatgtacggtcctt tggtgggaagcgaaatgtcgtagcctttaaaattctacctgtgatggacatgaacgagattacgtatcacatgttggagg tgacatacagtcatcttgtgttgtcaaaacagtcaaatgggaatgtagatggtggaggaggtggacagtctgtgtcatat ggtggaggggactatagtaactctgatggagggggaatggtcagtggtctcaatcctatacaaaaccaggttcatatgat tattcgaggaaatgtgacagaggaaggtgctagcattgagtctgtgtgtaagcagttacgaggggtaccagagaggagta tcagggaagccttggaattcctgagcagtgaagggcacatttactccaccatagatgaggaccatttcaaggcaacggac agctaa |
|
Protein
| Protein ID | pfu_aug2.0_107.1_23478.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23478.t1 MWNNNKGFQGYNQDQGQSFNQGGGYMSPGGFGTPQASQGDRKSRSRLQNILPCTIAEIINASHTDDKFYTGDIELSQVTL VGLITAVKETPTRIDYEVDDKSGPPLEVKHFVDNDDDVPVAERVQPLRENTYVRVYGNVRSFGGKRNVVAFKILPVMDMN EITYHMLEVTYSHLVLSKQSNGNVDGGGGGQSVSYGGGDYSNSDGGGMVSGLNPIQNQVHMIIRGNVTEEGASIESVCKQ LRGVPERSIREALEFLSSEGHIYSTIDEDHFKATDS |
|
| Protein ID | pfu_aug2.0_107.1_23478.t2 |
| Definition | - |
>pfu_aug2.0_107.1_23478.t2 MWNNNKGFQGYNQDQGQSFNQGGGYMSPGGFGTPQASQGDRKVTLVGLITAVKETPTRIDYEVDDKSGPPLEVKHFVDND DDVPVAERVQPLRENTYVRVYGNVRSFGGKRNVVAFKILPVMDMNEITYHMLEVTYSHLVLSKQSNGNVDGGGGGQSVSY GGGDYSNSDGGGMVSGLNPIQNQVHMIIRGNVTEEGASIESVCKQLRGVPERSIREALEFLSSEGHIYSTIDEDHFKATD S |
|