Gene
| Gene Model ID | pfu_aug2.0_107.1_23479 |
|---|---|
| Locus | scaffold107.1 : 388951 ... 391215 : - |
| To GenomeBrowser | scaffold107.1:388951..391215 |
| Genes list of scaffold | scaffold107.1 |
| Synonym | pfu_aug1.0_6470.1_52770 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_107.1_23479.t1 | 2 | 1 | TFIIE_beta | 68 | 129 | 2.7e-15 | 56.1 | 3.6e-19 | 2.7e-15 | 56.1 |
| pfu_aug2.0_107.1_23479.t1 | 2 | 2 | TFIIE_beta | 174 | 188 | 2.7e-15 | 56.1 | 1.0 | 7400.0 | -3.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_107.1_23479.t1 | gi|676478420|ref|XP_009061421.1| | hypothetical protein LOTGIDRAFT_127089 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_107.1_23479.t1 | gi|241625997|ref|XP_002407851.1| | transcription initiation factor IIE, beta subunit, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_107.1_23479.t1 | gi|533169739|ref|XP_005398427.1| | PREDICTED: transcription initiation factor IIE subunit beta isoform X2 [Chinchilla lanigera] | 0.0 |
| pfu_aug2.0_107.1_23479.t1 | gi|586520738|ref|XP_006916398.1| | PREDICTED: general transcription factor IIE subunit 2-like isoform X1 [Pteropus alecto] | 0.0 |
| pfu_aug2.0_107.1_23479.t1 | gi|527249474|ref|XP_005143052.1| | PREDICTED: general transcription factor IIE subunit 2-like [Melopsittacus undulatus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_107.1_23479.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23479.t1 atggatccagcattacttaaagagagaaatgccttcatggcaagggcgaaagcccaacctgtggtagaaaaaagaaagaa gcaaaaaagtcatgatgagccatcatcgaagaaacacaagccttcttctgcacctaaagccaaaccaccagaaccgagtg tcaaatcttttgattacagaagtgcatctggggcatcgcaagtcaagttcagcattttggcaaaaattgtgaaacacatg agaacacgacatcaacaaggtgacactcatcctctcacattagatgagattttagatgagacaaaacagcttgatattgg aactaagaacaaacattggcttatcactgagtctctcatcaaaaatccaaaaatcaaagtggtggaaaacgtagtggtgg tacggccaaatgacaagaagagggtgctgttttacaatgataaatactgtagatttactgtagatgaagagttccagaag ttgtggagaggagtatctgtggaaggtcttgacgagaaaaagatcgaggaatatttggagaaacaaggaataacgtccat gcaggatgttggacttaaaaagatgtctgctaatcaaaaacgcaagagaacagcgtccagaaagaacaagaacttcaaga agcataatgaacatcttggggacctcatgcaggactattctgacatgaccaaatga |
|
Protein
| Protein ID | pfu_aug2.0_107.1_23479.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_107.1_23479.t1 MDPALLKERNAFMARAKAQPVVEKRKKQKSHDEPSSKKHKPSSAPKAKPPEPSVKSFDYRSASGASQVKFSILAKIVKHM RTRHQQGDTHPLTLDEILDETKQLDIGTKNKHWLITESLIKNPKIKVVENVVVVRPNDKKRVLFYNDKYCRFTVDEEFQK LWRGVSVEGLDEKKIEEYLEKQGITSMQDVGLKKMSANQKRKRTASRKNKNFKKHNEHLGDLMQDYSDMTK |
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