Gene
| Gene Model ID | pfu_aug2.0_108.1_26859 |
|---|---|
| Locus | scaffold108.1 : 255704 ... 258336 : + |
| To GenomeBrowser | scaffold108.1:255704..258336 |
| Genes list of scaffold | scaffold108.1 |
| Synonym | pfu_aug1.0_16202.1_25501 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_108.1_26859.t1 | 1 | 1 | Arf | 9 | 197 | 0.0 | 159.9 | 0.0 | 0.0 | 159.6 |
| pfu_aug2.0_108.1_26859.t1 | 2 | 1 | G-alpha | 18 | 36 | 7.6e-06 | 24.8 | 0.11 | 160.0 | 0.7 |
| pfu_aug2.0_108.1_26859.t1 | 1 | 1 | SRPRB | 19 | 135 | 1.0e-05 | 24.8 | 8.6e-09 | 1.3e-05 | 24.5 |
| pfu_aug2.0_108.1_26859.t1 | 1 | 1 | Ras | 21 | 197 | 1.5e-07 | 30.9 | 1.5e-10 | 2.2e-07 | 30.3 |
| pfu_aug2.0_108.1_26859.t1 | 1 | 1 | Miro | 21 | 131 | 2.6e-06 | 27.9 | 2.7e-09 | 4.1e-06 | 27.2 |
| pfu_aug2.0_108.1_26859.t1 | 2 | 1 | MMR_HSR1 | 22 | 128 | 1.4e-06 | 28.2 | 2.1e-09 | 3.2e-06 | 27.1 |
| pfu_aug2.0_108.1_26859.t1 | 2 | 2 | G-alpha | 61 | 131 | 7.6e-06 | 24.8 | 4.5e-08 | 6.6e-05 | 21.7 |
| pfu_aug2.0_108.1_26859.t1 | 2 | 2 | MMR_HSR1 | 118 | 153 | 1.4e-06 | 28.2 | 0.77 | 1100.0 | -0.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_108.1_26859.t1 | gi|308491887|ref|XP_003108134.1| | hypothetical protein CRE_10231 [Caenorhabditis remanei] | 0.0 |
| pfu_aug2.0_108.1_26859.t1 | gi|17544540|ref|NP_500582.1| | SAR-1 [Caenorhabditis elegans] | 0.0 |
| pfu_aug2.0_108.1_26859.t1 | gi|268552315|ref|XP_002634140.1| | Hypothetical protein CBG01701 [Caenorhabditis briggsae] | 0.0 |
| pfu_aug2.0_108.1_26859.t1 | gi|410901154|ref|XP_003964061.1| | PREDICTED: GTP-binding protein SAR1b-like [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_108.1_26859.t1 | gi|554806314|ref|XP_005914091.1| | PREDICTED: GTP-binding protein SAR1b-like [Haplochromis burtoni] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_108.1_26859.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_108.1_26859.t1 atgcttctacagtggttttgggattttctcgcctatcttggctttttaaacaagaaagccaagttgtcaataataggatt agacaacgctggaaagtctaccctgatgagtttactcgctgatggcaaacttgttcaacaccctcccacacccagaccag tatcaagggagatgaccttgggaggtgtaaccttcaccacctatgaccttggaggccatactcatgcaagacggttgtgg aaggactattttccagcgataaatggcgtagtttttgttgttgacgccgccgatgctgaaagattagctgaagcgaaagt agagttaacagcagtgttagaggacgatttgatatcagacattccagttcttatactaggaaacaaaacagacaaaaggg aaagtataggaatggaaaaccttatacagcaactggatattcagcgacatctcacaaaaatgaatgatggactatatagt tataacaaagaagacaaataccacagaaagggcgaatgtaaactttttatgtgtagtatgctgaaaagggaggggtatgg agatgccttcaggtggttagccaatcaaattccataa |
|
Protein
| Protein ID | pfu_aug2.0_108.1_26859.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_108.1_26859.t1 MLLQWFWDFLAYLGFLNKKAKLSIIGLDNAGKSTLMSLLADGKLVQHPPTPRPVSREMTLGGVTFTTYDLGGHTHARRLW KDYFPAINGVVFVVDAADAERLAEAKVELTAVLEDDLISDIPVLILGNKTDKRESIGMENLIQQLDIQRHLTKMNDGLYS YNKEDKYHRKGECKLFMCSMLKREGYGDAFRWLANQIP |
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