Gene
| Gene Model ID | pfu_aug2.0_108.1_26862 |
|---|---|
| Locus | scaffold108.1 : 313909 ... 320562 : - |
| To GenomeBrowser | scaffold108.1:313909..320562 |
| Genes list of scaffold | scaffold108.1 |
| Synonym | pfu_aug1.0_4138.1_16304 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_108.1_26862.t1 | 2 | 1 | 3HCDH | 1 | 29 | 0.0 | 158.3 | 8.3e-12 | 6.1e-08 | 32.9 |
| pfu_aug2.0_108.1_26862.t1 | 1 | 1 | 3HCDH_N | 43 | 117 | 1.9e-24 | 86.3 | 3.9e-28 | 2.9e-24 | 85.7 |
| pfu_aug2.0_108.1_26862.t1 | 2 | 2 | 3HCDH | 119 | 216 | 0.0 | 158.3 | 4.79999e-40 | 3.5e-36 | 123.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_108.1_26862.t1 | gi|676437123|ref|XP_009048101.1| | hypothetical protein LOTGIDRAFT_203490 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_108.1_26862.t1 | gi|157132312|ref|XP_001655993.1| | AAEL002841-PA [Aedes aegypti] | 0.0 |
| pfu_aug2.0_108.1_26862.t1 | gi|170041182|ref|XP_001848352.1| | 3-hydroxyacyl-coa dehyrogenase [Culex quinquefasciatus] | 0.0 |
| pfu_aug2.0_108.1_26862.t1 | gi|318068061|ref|NP_001187893.1| | mitochondrial hydroxyacyl-coenzyme a dehydrogenase [Ictalurus punctatus] | 0.0 |
| pfu_aug2.0_108.1_26862.t1 | gi|524876118|ref|XP_005094778.1| | PREDICTED: hydroxyacyl-coenzyme A dehydrogenase, mitochondrial-like [Aplysia californica] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_108.1_26862.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_108.1_26862.t1 atgctggaaagaggagatgctagtccacaggatattgacaatgccatgaagctcggtgccggctatcccatggggccttt ttcctttgttatgactnatgtaggttgcctcttacaagacctttctatacataccattttcacaagtaatacgtcttcca ttcctatcggagatattgcgtcatcaacaaaacgtctggatagatttggtggtttacactttttcaatcctgtcccagtg atgaagcttttagaggttatccgaatccctgcaactagtgatgaaactttcaacaaactattagcatttggcaaagacat gcaaaaagcaactgtcaattgcaaggacacccccggattcattgtcaatcgattactggtaccatacatgattgaagctg tacgtatgctggaaagaggagatgctagtccacgggatattgacactgccatgaagcttggtgccggctatcccatggga ccttttgaactcagtgactatgtggggttggataccatgaagtttatattagatggatggtccaaaaattatccagagaa tcctttatttaggccaagcccaatgctagacaaacttgtgggtgagggtaagctaggagccaagtcaggggagggcttct attcctataagaagtag |
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Protein
| Protein ID | pfu_aug2.0_108.1_26862.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_108.1_26862.t1 MLERGDASPQDIDNAMKLGAGYPMGPFSFVMTXVGCLLQDLSIHTIFTSNTSSIPIGDIASSTKRLDRFGGLHFFNPVPV MKLLEVIRIPATSDETFNKLLAFGKDMQKATVNCKDTPGFIVNRLLVPYMIEAVRMLERGDASPRDIDTAMKLGAGYPMG PFELSDYVGLDTMKFILDGWSKNYPENPLFRPSPMLDKLVGEGKLGAKSGEGFYSYKK |
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