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OIST Marine Genomics Unit since 2008

Gene
Gene Model IDpfu_aug2.0_108.1_26864
Locus scaffold108.1 : 344961 ... 349262 : -
To GenomeBrowser scaffold108.1:344961..349262
Genes list of scaffold scaffold108.1
Synonym pfu_aug1.0_46935.1_41393

Manual annotation
Hmmer Search for Pfam
query Total ID Target From To Eval Score cEval iEval Score
pfu_aug2.0_108.1_26864.t1 19 1 zf-H2C2_2 4 16 0.0 314.1 4.1e-05 0.075 13.3
pfu_aug2.0_108.1_26864.t1 17 1 C1_3 6 16 3.3e-06 27.0 0.018 34.0 4.6
pfu_aug2.0_108.1_26864.t1 18 1 zf-H2C2_5 7 29 4.79945e-42 139.7 6.2e-07 0.0011 19.0
pfu_aug2.0_108.1_26864.t1 18 1 zf-C2H2 7 29 1.1e-31 107.1 0.002 3.6 8.1
pfu_aug2.0_108.1_26864.t1 18 1 zf-C2H2_4 7 29 7.5e-18 63.4 0.092 170.0 2.8
pfu_aug2.0_108.1_26864.t1 19 2 zf-H2C2_2 23 44 0.0 314.1 3.0e-08 5.6e-05 23.2
pfu_aug2.0_108.1_26864.t1 17 2 C1_3 33 42 3.3e-06 27.0 0.00056 1.0 9.4
pfu_aug2.0_108.1_26864.t1 18 2 zf-H2C2_5 35 53 4.79945e-42 139.7 0.0095 18.0 5.8
pfu_aug2.0_108.1_26864.t1 18 2 zf-C2H2 35 57 1.1e-31 107.1 0.0041 7.7 7.0
pfu_aug2.0_108.1_26864.t1 18 2 zf-C2H2_4 35 57 7.5e-18 63.4 0.0067 12.0 6.4
pfu_aug2.0_108.1_26864.t1 19 3 zf-H2C2_2 51 74 0.0 314.1 1.5e-06 0.0029 17.8
pfu_aug2.0_108.1_26864.t1 18 3 zf-H2C2_5 63 75 4.79945e-42 139.7 0.57 1100.0 0.2
pfu_aug2.0_108.1_26864.t1 18 3 zf-C2H2 64 85 1.1e-31 107.1 3.7e-06 0.0069 16.6
pfu_aug2.0_108.1_26864.t1 18 3 zf-C2H2_4 64 85 7.5e-18 63.4 0.0024 4.5 7.8
pfu_aug2.0_108.1_26864.t1 17 3 C1_3 64 71 3.3e-06 27.0 0.39 720.0 0.3
pfu_aug2.0_108.1_26864.t1 19 4 zf-H2C2_2 78 100 0.0 314.1 5.9e-08 0.00011 22.2
pfu_aug2.0_108.1_26864.t1 18 4 zf-C2H2_4 91 113 7.5e-18 63.4 0.00036 0.67 10.4
pfu_aug2.0_108.1_26864.t1 18 4 zf-H2C2_5 92 113 4.79945e-42 139.7 0.00029 0.53 10.6
pfu_aug2.0_108.1_26864.t1 17 4 C1_3 92 98 3.3e-06 27.0 0.33 610.0 0.5
pfu_aug2.0_108.1_26864.t1 18 4 zf-C2H2 93 113 1.1e-31 107.1 0.015 28.0 5.3
pfu_aug2.0_108.1_26864.t1 19 5 zf-H2C2_2 107 128 0.0 314.1 3.6e-05 0.068 13.5
pfu_aug2.0_108.1_26864.t1 18 5 zf-H2C2_5 119 141 4.79945e-42 139.7 0.38 710.0 0.7
pfu_aug2.0_108.1_26864.t1 18 5 zf-C2H2 119 141 1.1e-31 107.1 0.00018 0.34 11.3
pfu_aug2.0_108.1_26864.t1 18 5 zf-C2H2_4 119 141 7.5e-18 63.4 0.011 20.0 5.8
pfu_aug2.0_108.1_26864.t1 17 5 C1_3 120 124 3.3e-06 27.0 1.6 3000.0 -1.7
pfu_aug2.0_108.1_26864.t1 19 6 zf-H2C2_2 133 154 0.0 314.1 1.6e-07 0.0003 20.9
pfu_aug2.0_108.1_26864.t1 17 6 C1_3 144 159 3.3e-06 27.0 0.0023 4.3 7.4
pfu_aug2.0_108.1_26864.t1 18 6 zf-C2H2 147 169 1.1e-31 107.1 0.093 170.0 2.8
pfu_aug2.0_108.1_26864.t1 18 6 zf-C2H2_4 147 169 7.5e-18 63.4 0.069 130.0 3.2
pfu_aug2.0_108.1_26864.t1 18 6 zf-H2C2_5 148 169 4.79945e-42 139.7 2.0e-05 0.037 14.2
pfu_aug2.0_108.1_26864.t1 19 7 zf-H2C2_2 162 185 0.0 314.1 2.8e-06 0.0051 17.0
pfu_aug2.0_108.1_26864.t1 18 7 zf-H2C2_5 177 199 4.79945e-42 139.7 6.8e-06 0.013 15.7
pfu_aug2.0_108.1_26864.t1 18 7 zf-C2H2 177 199 1.1e-31 107.1 8.1e-05 0.15 12.4
pfu_aug2.0_108.1_26864.t1 18 7 zf-C2H2_4 177 199 7.5e-18 63.4 0.025 47.0 4.6
pfu_aug2.0_108.1_26864.t1 17 7 C1_3 177 186 3.3e-06 27.0 0.00097 1.8 8.6
pfu_aug2.0_108.1_26864.t1 19 8 zf-H2C2_2 192 214 0.0 314.1 6.7e-05 0.12 12.6
pfu_aug2.0_108.1_26864.t1 18 8 zf-H2C2_5 207 215 4.79945e-42 139.7 0.036 66.0 4.0
pfu_aug2.0_108.1_26864.t1 18 8 zf-C2H2 207 213 1.1e-31 107.1 6.0 11000.0 -2.9
pfu_aug2.0_108.1_26864.t1 18 8 zf-C2H2_4 207 212 7.5e-18 63.4 3.8 7000.0 -2.2
pfu_aug2.0_108.1_26864.t1 17 8 C1_3 207 232 3.3e-06 27.0 0.00092 1.7 8.7
pfu_aug2.0_108.1_26864.t1 19 9 zf-H2C2_2 220 231 0.0 314.1 0.0017 3.2 8.2
pfu_aug2.0_108.1_26864.t1 18 9 zf-H2C2_5 223 245 4.79945e-42 139.7 6.8e-06 0.013 15.7
pfu_aug2.0_108.1_26864.t1 18 9 zf-C2H2 223 245 1.1e-31 107.1 8.1e-05 0.15 12.4
pfu_aug2.0_108.1_26864.t1 18 9 zf-C2H2_4 223 245 7.5e-18 63.4 0.025 47.0 4.6
pfu_aug2.0_108.1_26864.t1 19 10 zf-H2C2_2 238 263 0.0 314.1 1.1e-05 0.021 15.0
pfu_aug2.0_108.1_26864.t1 18 10 zf-H2C2_5 253 274 4.79945e-42 139.7 7.4e-05 0.14 12.4
pfu_aug2.0_108.1_26864.t1 18 10 zf-C2H2 253 274 1.1e-31 107.1 0.0018 3.3 8.2
pfu_aug2.0_108.1_26864.t1 18 10 zf-C2H2_4 253 274 7.5e-18 63.4 0.054 100.0 3.6
pfu_aug2.0_108.1_26864.t1 17 9 C1_3 253 258 3.3e-06 27.0 4.1 7500.0 -3.0
pfu_aug2.0_108.1_26864.t1 19 11 zf-H2C2_2 266 292 0.0 314.1 3.5e-06 0.0064 16.7
pfu_aug2.0_108.1_26864.t1 18 11 zf-H2C2_5 283 304 4.79945e-42 139.7 0.00018 0.33 11.2
pfu_aug2.0_108.1_26864.t1 18 11 zf-C2H2 283 304 1.1e-31 107.1 0.002 3.7 8.0
pfu_aug2.0_108.1_26864.t1 18 11 zf-C2H2_4 283 304 7.5e-18 63.4 6.7e-06 0.012 15.8
pfu_aug2.0_108.1_26864.t1 17 10 C1_3 283 289 3.3e-06 27.0 0.078 140.0 2.5
pfu_aug2.0_108.1_26864.t1 19 12 zf-H2C2_2 296 319 0.0 314.1 3.8e-12 7.0e-09 35.5
pfu_aug2.0_108.1_26864.t1 17 11 C1_3 309 317 3.3e-06 27.0 0.16 300.0 1.5
pfu_aug2.0_108.1_26864.t1 18 12 zf-H2C2_5 310 332 4.79945e-42 139.7 4.5e-05 0.084 13.1
pfu_aug2.0_108.1_26864.t1 18 12 zf-C2H2 310 332 1.1e-31 107.1 0.00051 0.94 9.9
pfu_aug2.0_108.1_26864.t1 18 12 zf-C2H2_4 310 332 7.5e-18 63.4 0.0031 5.8 7.4
pfu_aug2.0_108.1_26864.t1 19 13 zf-H2C2_2 324 349 0.0 314.1 7.4e-10 1.4e-06 28.3
pfu_aug2.0_108.1_26864.t1 17 12 C1_3 337 346 3.3e-06 27.0 0.076 140.0 2.6
pfu_aug2.0_108.1_26864.t1 18 13 zf-H2C2_5 338 360 4.79945e-42 139.7 0.0031 5.8 7.3
pfu_aug2.0_108.1_26864.t1 18 13 zf-C2H2 338 360 1.1e-31 107.1 0.001 1.9 8.9
pfu_aug2.0_108.1_26864.t1 18 13 zf-C2H2_4 338 360 7.5e-18 63.4 0.0041 7.6 7.1
pfu_aug2.0_108.1_26864.t1 19 14 zf-H2C2_2 353 376 0.0 314.1 2.3e-10 4.2e-07 29.9
pfu_aug2.0_108.1_26864.t1 17 13 C1_3 363 373 3.3e-06 27.0 0.00041 0.76 9.8
pfu_aug2.0_108.1_26864.t1 18 14 zf-H2C2_5 366 388 4.79945e-42 139.7 4.5e-07 0.00084 19.4
pfu_aug2.0_108.1_26864.t1 18 14 zf-C2H2 366 388 1.1e-31 107.1 3.1e-06 0.0057 16.9
pfu_aug2.0_108.1_26864.t1 18 14 zf-C2H2_4 366 388 7.5e-18 63.4 8.5e-05 0.16 12.3
pfu_aug2.0_108.1_26864.t1 19 15 zf-H2C2_2 380 404 0.0 314.1 1.2e-10 2.1e-07 30.8
pfu_aug2.0_108.1_26864.t1 17 14 C1_3 392 401 3.3e-06 27.0 0.022 41.0 4.3
pfu_aug2.0_108.1_26864.t1 18 15 zf-H2C2_5 394 416 4.79945e-42 139.7 2.0e-07 0.00038 20.5
pfu_aug2.0_108.1_26864.t1 18 15 zf-C2H2 394 416 1.1e-31 107.1 2.0e-07 0.00037 20.6
pfu_aug2.0_108.1_26864.t1 18 15 zf-C2H2_4 394 416 7.5e-18 63.4 6.8e-06 0.013 15.8
pfu_aug2.0_108.1_26864.t1 19 16 zf-H2C2_2 408 432 0.0 314.1 3.7e-09 7.0e-06 26.0
pfu_aug2.0_108.1_26864.t1 17 15 C1_3 421 430 3.3e-06 27.0 0.068 130.0 2.7
pfu_aug2.0_108.1_26864.t1 18 16 zf-H2C2_5 422 444 4.79945e-42 139.7 6.1e-06 0.011 15.8
pfu_aug2.0_108.1_26864.t1 18 16 zf-C2H2 422 444 1.1e-31 107.1 6.4e-06 0.012 15.9
pfu_aug2.0_108.1_26864.t1 18 16 zf-C2H2_4 422 444 7.5e-18 63.4 0.0037 6.8 7.2
pfu_aug2.0_108.1_26864.t1 19 17 zf-H2C2_2 437 457 0.0 314.1 4.9e-10 9.1e-07 28.8
pfu_aug2.0_108.1_26864.t1 17 16 C1_3 447 458 3.3e-06 27.0 5.6e-05 0.1 12.6
pfu_aug2.0_108.1_26864.t1 18 17 zf-H2C2_5 450 472 4.79945e-42 139.7 2.0e-06 0.0036 17.4
pfu_aug2.0_108.1_26864.t1 18 17 zf-C2H2 450 472 1.1e-31 107.1 6.2e-07 0.0011 19.1
pfu_aug2.0_108.1_26864.t1 18 17 zf-C2H2_4 450 472 7.5e-18 63.4 8.2e-06 0.015 15.5
pfu_aug2.0_108.1_26864.t1 19 18 zf-H2C2_2 464 489 0.0 314.1 6.4e-13 1.2e-09 37.9
pfu_aug2.0_108.1_26864.t1 17 17 C1_3 476 485 3.3e-06 27.0 0.036 67.0 3.6
pfu_aug2.0_108.1_26864.t1 18 18 zf-H2C2_5 478 500 4.79945e-42 139.7 0.002 3.7 7.9
pfu_aug2.0_108.1_26864.t1 18 18 zf-C2H2 478 500 1.1e-31 107.1 0.00018 0.33 11.3
pfu_aug2.0_108.1_26864.t1 18 18 zf-C2H2_4 478 500 7.5e-18 63.4 0.0021 3.9 8.0
pfu_aug2.0_108.1_26864.t1 19 19 zf-H2C2_2 495 502 0.0 314.1 2.9 5300.0 -2.0

Blast Hit to nr / sp
query Subject ID Subject Name evalue
pfu_aug2.0_108.1_26864.t1 gi|260789295|ref|XP_002589682.1| hypothetical protein BRAFLDRAFT_61494 [Branchiostoma floridae] 0.0
pfu_aug2.0_108.1_26864.t1 gi|260781334|ref|XP_002585772.1| hypothetical protein BRAFLDRAFT_111167 [Branchiostoma floridae] 0.0
pfu_aug2.0_108.1_26864.t1 gi|260813553|ref|XP_002601482.1| hypothetical protein BRAFLDRAFT_116075 [Branchiostoma floridae] 0.0

Transcript
Transcript IDpfu_aug2.0_108.1_26864.t1
Definition- 
>pfu_aug2.0_108.1_26864.t1
atggatgaagaaaagccttacacatgtgacaagtgtgattatgcaactgatgtcaaaggccgcatgacgagacacaaaaa
gatccacactggtgcaaagccctatcattgtgagaaatgtgactttaaagctgtatccaaaggtgccgtcaaaatacatc
agattgtacatgatacagagaaaaagatcaaatgtgaagaatgtgataaaatgtttgtgagtaaatatcgtttgaatggc
cacaaaaggattcacaaaaaagaaaagcctttcctgtgtgatttgtgtgattttaagggtgctaatgtgtctgctcttca
caggcataaactagttcacactatcaataaacaacacacatgtgatgtatgtcttatcagttactcaagtgcagctgcac
tgaatacccattcccgcatccatacaggggagattttctttgagtgtgatatctgtagctatatttcacatgagaagaga
gggttagatgagcacaagaaatcacatctgaaacctgaagagaagaaatacaagtgtgatatctgcgacttttctgccaa
taagcaatatgattttgaaatacatgtaggaacacatacagggaatgttacagaactgaaatgcagcttttgtgaatact
ctannnngaaacctgaagagaagaaatacaagtgtgatatctgcgacttttctgccaataagcaatatgattttgaaata
catgtaggaacacatacagggaatgttacagaactgaaatgcagcttttgtgaatactctaccgtttacggagcaagttt
aaaagtacacctgaagatacacaacaaggataaggagtataatgtgaaatgtgatatatgtgacttcagaactttcaact
attgtaatttaagaagccattacagaaagcatactggggagaaaccgtttaagtgtgatttatgtgactacagagctgca
tttaaaaacaatcttagaatgcatcagctactacatactggagaaaaaccgttcaagtgtgatatgtgtgactttacggc
agcgcacacaaccactctgaccattcataaacgccaacacactggagaaaagccctataaatgtgatgaatgtgatttca
ggactaagcagagatctcatctaaagacacataaaagaattcacacaggagaaaaaccctatcaatgtaacgaatgtgac
tataggaccacccagtcatcacatcttaaatcacacatgctcacacacacaggggaaaaacctttccagtgtaaggaatg
cgacttctgtacaactaccccagccaaactaagagttcatcagagacaacacacaggagaaaagccatacaaatgtacac
agtgcgacttcgcctctcctcaatccagcgctttgagagtacacatgaggaaacacactggtgaaaaaccatatagatgt
gatatgtgtgactacagtaccgtgaccagaaaccggctctttcaacatgcaaaaacacataaacaaattaaagaagaggc
agaaaaaatcaaagaagaagtagaagacttagatatggatcagttgtaa

Protein
Protein IDpfu_aug2.0_108.1_26864.t1
Definition- 
>pfu_aug2.0_108.1_26864.t1
MDEEKPYTCDKCDYATDVKGRMTRHKKIHTGAKPYHCEKCDFKAVSKGAVKIHQIVHDTEKKIKCEECDKMFVSKYRLNG
HKRIHKKEKPFLCDLCDFKGANVSALHRHKLVHTINKQHTCDVCLISYSSAAALNTHSRIHTGEIFFECDICSYISHEKR
GLDEHKKSHLKPEEKKYKCDICDFSANKQYDFEIHVGTHTGNVTELKCSFCEYSXXKPEEKKYKCDICDFSANKQYDFEI
HVGTHTGNVTELKCSFCEYSTVYGASLKVHLKIHNKDKEYNVKCDICDFRTFNYCNLRSHYRKHTGEKPFKCDLCDYRAA
FKNNLRMHQLLHTGEKPFKCDMCDFTAAHTTTLTIHKRQHTGEKPYKCDECDFRTKQRSHLKTHKRIHTGEKPYQCNECD
YRTTQSSHLKSHMLTHTGEKPFQCKECDFCTTTPAKLRVHQRQHTGEKPYKCTQCDFASPQSSALRVHMRKHTGEKPYRC
DMCDYSTVTRNRLFQHAKTHKQIKEEAEKIKEEVEDLDMDQL

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