Gene
| Gene Model ID | pfu_aug2.0_1080.1_01367 |
|---|---|
| Locus | scaffold1080.1 : 74956 ... 98914 : + |
| To GenomeBrowser | scaffold1080.1:74956..98914 |
| Genes list of scaffold | scaffold1080.1 |
| Synonym | pfu_aug1.0_2401.1_01096 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1080.1_01367.t2 | 4 | 1 | Ependymin | 60 | 82 | 9.5e-08 | 31.8 | 9.8e-06 | 0.073 | 12.7 |
| pfu_aug2.0_1080.1_01367.t2 | 4 | 2 | Ependymin | 91 | 112 | 9.5e-08 | 31.8 | 0.097 | 720.0 | -0.2 |
| pfu_aug2.0_1080.1_01367.t2 | 4 | 3 | Ependymin | 182 | 217 | 9.5e-08 | 31.8 | 0.00094 | 7.0 | 6.3 |
| pfu_aug2.0_1080.1_01367.t2 | 4 | 4 | Ependymin | 228 | 250 | 9.5e-08 | 31.8 | 1.1e-05 | 0.082 | 12.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1080.1_01367.t2 | gi|676455515|ref|XP_009054031.1| | hypothetical protein LOTGIDRAFT_160696 [Lottia gigantea] | 5.0e-08 |
| pfu_aug2.0_1080.1_01367.t2 | gi|260825510|ref|XP_002607709.1| | hypothetical protein BRAFLDRAFT_82844 [Branchiostoma floridae] | 3.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1080.1_01367.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01367.t1 atgtctcacgttggctcagatgttggcgtgagggggtccaaggagcaagaggaaaccggagtactcggagaaaaacctcc taccgaggcctggatgggggaccacctaccctcccacataagacccttcgctgaatctaggattcgaacccgggacctta gagtgtacatcacccagatcaaggcctttatgaatatgacatcctatataaaggatccatcagttttcgacgtaccggat tcctgtaataatatcatagattcattgggtaatatctatacagtggcgaacaaaacatgtaacgtccagaaaacggaagc caagatgaatgagctgtgtatagcaggcaccagacttacaatgattatttttgtgtggatttctattctctcctttatct tcccgacggctttgtcatgttgctcccccaagacatgggagggtatccagggactccaggcgggtgtggtcaagaacggg gttccctctcatgaagagtcacagaatctggtatcctatgacgccattaatgaaagaatagtagcaaataatggtaacgg tcaaatagttctagaggactttaaaaagggtttgatgtacgtggtagtgaatggttcctgtacaattagtaagataccca agacaatgagagaagcctgttcaggacctggagcagtggctgctcagaacgcttacttcggatggggaggtaacctgata aacgttacaacgtgggcgtggcaacaagccggactgatggtttattacacagtaacccccgacgactgtctacctgttac tgagacagtccacggcaccactaatggggtgtacctcacccagatcaaggcctttatgaatatgacatcctatataaagg atccatcagtcttcgacgtaccggattcctgtaataatatcatagattcattggtgcactcgtcccacggtgatcgtgtg ttcggctaa |
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| Transcript ID | pfu_aug2.0_1080.1_01367.t2 |
| Definition | - |
>pfu_aug2.0_1080.1_01367.t2 atgtctcacgttggctcagatgttggcgtgagggggtccaaggagcaagaggaaaccggagtactcggagaaaaacctcc taccgaggcctggatgggggaccacctaccctcccacataagacccttcgctgaatctaggattcgaacccgggacctta gagtgtacatcacccagatcaaggcctttatgaatatgacatcctatataaaggatccatcagttttcgacgtaccggat tcctgtaataatatcatagattcattgggtaatatctatacagtggcgaacaaaacatgtaacgtccagaaaacggaagc caagatgaatgagctgtgtatagcaggcaccagacttacaatgattatttttgtgtggatttctattctctcctttatct tcccgacggctttgtcatgttgctcccccaagacatgggagggtatccagggactccaggcgggtgtggtcaagaacggg gttccctctcatgaagagtcacagaatctggtatcctatgacgccattaatgaaagaatagtagcaaataatggtaacgg tcaaatagttctagaggactttaaaaagggtttgatgtacgtggtagtgaatggttcctgtacaattagtaagataccca agacaatgagagaagcctgttcaggactgtacctcacccagatcaaggcctttatgaatatgacatcctatataaaggat ccatcagtcttcgacgtaccggattcctgtaataatatcatagattcattggtgcactcgtcccacggtgatcgtgtgtt cggctaa |
|
Protein
| Protein ID | pfu_aug2.0_1080.1_01367.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01367.t1 MSHVGSDVGVRGSKEQEETGVLGEKPPTEAWMGDHLPSHIRPFAESRIRTRDLRVYITQIKAFMNMTSYIKDPSVFDVPD SCNNIIDSLGNIYTVANKTCNVQKTEAKMNELCIAGTRLTMIIFVWISILSFIFPTALSCCSPKTWEGIQGLQAGVVKNG VPSHEESQNLVSYDAINERIVANNGNGQIVLEDFKKGLMYVVVNGSCTISKIPKTMREACSGPGAVAAQNAYFGWGGNLI NVTTWAWQQAGLMVYYTVTPDDCLPVTETVHGTTNGVYLTQIKAFMNMTSYIKDPSVFDVPDSCNNIIDSLVHSSHGDRV FG |
|
| Protein ID | pfu_aug2.0_1080.1_01367.t2 |
| Definition | - |
>pfu_aug2.0_1080.1_01367.t2 MSHVGSDVGVRGSKEQEETGVLGEKPPTEAWMGDHLPSHIRPFAESRIRTRDLRVYITQIKAFMNMTSYIKDPSVFDVPD SCNNIIDSLGNIYTVANKTCNVQKTEAKMNELCIAGTRLTMIIFVWISILSFIFPTALSCCSPKTWEGIQGLQAGVVKNG VPSHEESQNLVSYDAINERIVANNGNGQIVLEDFKKGLMYVVVNGSCTISKIPKTMREACSGLYLTQIKAFMNMTSYIKD PSVFDVPDSCNNIIDSLVHSSHGDRVFG |
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