Gene
| Gene Model ID | pfu_aug2.0_1080.1_01368 |
|---|---|
| Locus | scaffold1080.1 : 99623 ... 133335 : - |
| To GenomeBrowser | scaffold1080.1:99623..133335 |
| Genes list of scaffold | scaffold1080.1 |
| Synonym | pfu_aug1.0_5481.1_02012 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 5 -3 exoribonuclease 1-like | GO:0000956 GO:0003676 GO:0004527 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1080.1_01368.t1 | 3 | 1 | XRN_N | 1 | 71 | 0.0 | 241.0 | 3.3e-25 | 4.8e-21 | 75.2 |
| pfu_aug2.0_1080.1_01368.t1 | 3 | 2 | XRN_N | 77 | 197 | 0.0 | 241.0 | 0.0 | 0.0 | 168.2 |
| pfu_aug2.0_1080.1_01368.t1 | 3 | 3 | XRN_N | 1761 | 1804 | 0.0 | 241.0 | 0.65 | 9700.0 | -4.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1080.1_01368.t1 | gi|291220730|ref|XP_002730377.1| | PREDICTED: 5'-3' exoribonuclease 1-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_1080.1_01368.t1 | gi|573900301|ref|XP_006637879.1| | PREDICTED: 5'-3' exoribonuclease 1-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1080.1_01368.t1 | gi|556999932|ref|XP_006002838.1| | PREDICTED: 5'-3' exoribonuclease 1 isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1080.1_01368.t1 | gi|528470594|ref|XP_005163375.1| | PREDICTED: 5'-3' exoribonuclease 1 isoform X2 [Danio rerio] | 0.0 |
| pfu_aug2.0_1080.1_01368.t1 | gi|289577074|ref|NP_957327.2| | 5'-3' exoribonuclease 1 [Danio rerio] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1080.1_01368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01368.t1 atgggtgttccaaagttttaccgatggataagcgaacgttatccttgcttaagcgaggttgtgaaggaatttcagattcc agaatttgacaacttatacctggatatgaatggaatcattcacgtatgttcacatccagatgatggaaatccacatttca gaattacggaggaaaaaatattccgtgacattttccattacttagagatatacatgtctgcaagagaagcggaggaatta gagaggaaagccagagaatccggagaagttttacctaccgagaaaagatttgactctaactgtattacaccagggacaga gtttatggtgaggttacaagagcagcttaagtactttgttacgagtaaaatctctaacgacccgctctggcacacagtag atgtttacttgtctggacatgagactcccggggagggagaacacaagatcatggactttatacgacagcagaaatctgag ccaagctatgaccctaatactcgacactgtctgtacggacttgacgctgatttgataatgcttggtttgacgtcacatga gccacatttttccttactgagggaggaagtgagatttggaggccacaaagacaagaataaaagacctgcaacacctgaag aaacaacatttcaccttctacatttgtctttgatgagagaatacctggactttgaatttgaatcgttaaaggatagtcta ccttttggatatgacttagagaagattatagatgactgggtgttgatgggattcctggtcggcaatgattttatacccca cctcccccatctacatatccaacatgacgccctgccactactgtggaaaacgtatatgaacatcctaccagaatgcggag gttatttgaatgatggtggacatctgaacttggaacgatttgaacaatacatgaaggaattagcgaagtttgatatagac aagtttgaggagacattctccgatctgaaatggttagagaccaaaatagagggaaaagccgtcaacatggaggcagccaa tgtagctgatgaaatcaaggcaagaaagatgaggaaagagaatgccaacaagtttgcagcgttacaagatactgaggagg acggtcttggggacgagttcttgccaacatcacaaaaagttagtgccgctaccacccctataacaccagacactcctgat tctgatgatgaagacgacattaacacttttgatgaggagtttacactacataaaaaacattactacatgactaagatgga gtatgaaaacgtagataaagaagtgttgagagaccagtcagaagggtatatccgagccatacagtggattttattgtatt actatgaaggggttccctcatggagctggttctacccacaccactatgctccttatataagtgatgtcaccgattttaag gacatgaacatagagtttgatttatctacccctttcttaccgttccaacaactgatggctgtactaccagcagcaagtaa agaactactacctgagccatatcagaaattaatgacccaggattatagcccagtgatagatttttatcctgtcaatttcc aaacagatctgaacggtaaacaacaagattgggaggcagtcgtcttaattccgttcatagatgagaatcgtttgttggac gccatgcggacggtggaaagtaaactgagcgacccagagaagaaacgtaacagtcacggaccgtgtctgttatataatta ctctaaagaggagctggaaccgtacccctcctctctgccgggagtcttccctgatatcgtcattaaccatgctagattaa caaagatcccattagaggcattccttgttgacaagaagaaactatggaaaggacttttaccgggtgtaaaactagacgtt tatttcccagggttccctacacttaaacatttacctcacagggcgtttctgaagaaggacggagttaaggtgttccagca ttgcagtaaaaacgagaatatgttgttagagatactctctgaagatgaacaggtgccatctctctctactgttgccagtg aatatgtggggaaaactatatatgtggcttggccacacctttatgaagcgaaggtcatatctgtggcagatagagaagaa aggaaagtaccaaacgggaaaactaaatataacatacagagggagccactgggagaggatagtgctgccatctggtgttc tcagattaaaagtctcacagataggtacaaagacagacttggaataatcgtaggagatacatattacatactgaatgtgc agccaatgattggacgaaagtatatttgtggatcgcacggtgttattacacacgagaaacagttttctaaagatacagta ccattcttattacaaacaacagtcaaggatattgccgtccatgatccagccttctgtcagtttaagacgttacgtgagct tttccctgttaaagagatggttttcatgcttggctggccccactacgggggtcaaggtgaggtcatggacacagaggaag gggaatcccctagggtcagaattaacgtcattattcccgaagaacctaaactggataagtttgcctacaactcggagcga tacagccagcagtttttcccagggtacattgctgctcagagagccggtatcagctctcacttcctgtctcgtattactgg cagtatctttgttaaaccagggtcggcagacaatccccaggaaggacataacatcaatataggtcttaacatgaagttta ccaagcgtagtgaagaaatgccagggtataccaaacagacaacggatggatggacgtactcacagaaagccattagtact gtgtcagagtacatgcagaggttcccagagatcgtggagtacatatctaacaacgatagaaataaaggggacgtctttta tgaagaggatctatttggagatacgggtgtgactttgaagcaagtacaagattacttgaagagtttgccgatagcacaga tcaagacgcagaaaacaggaacggataatttagatgaaggaattatcaaagccatagaacaggaagtggacagggttcag gatataaataggaaaggcaagcgagtgaagatgcaggtcaaaccacatctactgttcaggccaatcataggacagggtgg acaggtgccagacctatcagcaaagtactacttgtttgacagagttgttaacgtcaggaatgggtactcggtgccgtttg gattaagagggacggtggtggggatccataagggagagaaggagtcagacgttatatatgaagtcgtgtttgacgaggcc ttccaagggggacttactatcagatgttcagagggtagaggctatagagtacctccggcagctctgatcaacataacgta tggagaacggaaaaacggtgcaagagccgaccctgtggctagtcaacaaaactcatatgaacggacacaaaattatcata cgtcacaacctcaatatcccaggcagggtagttacaatcaaaatgcctggcaacagggtcaaagttcacgaggttacaat gaggccgttactaacgactacaacagacagggttcctatagcaacttcaaaaacagaaatgacaatcgtgcgttttacaa cgagaattatcacaatgattatgatgaggattataactatgcgggatatgacacaagcaacaggaaaaggcaacagtacg ataagaatgttaatgtgaggtcaccgaggggtaaaaaccagcatgacaagaatcccggagtgatggggtccccacgggga aaccaacaaaatcagaggcaagcacagaaggaaagtgtacataaacatccaggagccaatgaaaatcaacctgacaagcc caagacgccggctacaaaaccagactccctcaacctgaggcagcagagctttgatgggtctgaatcagctgccccgccca tgtttgtgacgcctaaaatatccccaggacgtagggaccctcggagggatagtggaggaggcggtcaaagtaagatttac catgacagtcacaattcagaatttgcaaatatgtggaaagaacttcagaccggagccaacgaaagtggtaaagctccctc tagtggaaaagatgaaaataaagggccaacactcttgcaagcagctgaatcgttacctaaagtgccttccccggttgtta atcactcagagactgttgaatctaagagagaggttcaggaggagaaaaagacagtaacattagactctctgtttaaggag gcaagtaaagttaaatcagaagaggatcagtttgctgccatgttcaaatctttacaaatttctgccgagaaaaaagaaga aacgacgactaagccagcacaaaaccatggaattgtagaggaaagtacaaacgctctaaaacaaatgctgaagattggct ctgaagacaatggcttaacggatagtggcattaaggatagtggtaaaaaggatagcgacaaaaatgatagcgggattaag gacgttacggaggaagtgacatcagaaccctccaaaacctacggcagacaagtgtcgctacaagaattatttgaaggggt gaaaggtcagttaccagctaccaatacagtggcccccgcccagatccacaagtcgcctccccagggagcgggaggtggtg gtcatccaactgtgtccccaacaaaacaagcacctgctgcacatcaataccgaggtgcacctccacagaaccgattctca aaaccacaccagaaatcacaacaacctccacatcaaccgcagcaaccaggaggaccgaaccgcttccctggacaccataa acggaatccggttatggaactgaagaactggtgtcagaccatgggactgagagaaccaaagtatgatttctttggtcagg gtgccttccgaggcccaccagtacatcctttgatgggtggagctatgccccagttcccacctcccccatccagacaacca tcaccacgacaacaagccccacccagacagttctcatcacctaactccgccttcaaacctgtctctgcagtattaaatgg tccttacccatacccaaatcaatacccaaaccaaaggcattactctcaaccgcctcaaaatcagtacaaccaaccaaatc agtttaacaaccctaggtacaccaatcagtacgaagataggcgaggccaacagcaaccgaccaatcagaataaccgatac aacaataggtcggcggggaagaggcagagtcaagaaaaagtgaacgatagacaaatggagaacagtaaagaagacgagag aggaaaagatgatgttacagagaaacatgcacagagtaacccatttataccgatgcaggtaacaaggaaaactccccaga agagacgagattcagaaagtgaaagtagaagtgtaaatcccaccgaaactaagtcacataaatctcaggataaagaagtt aagagtgtcgtcagaaatatactgccggaaaatacagtgacagtaaatcacagtgataaaagtgaacatgtcagaaatga tgtcagttgtgatgaagctacattacagacttctaataataaacagacagaggaagtgaagacaccgtcaaagagtgaac gacatgtaaaggaaggttctcatacaccgtccaacaaacaaccgggaaaacgacgaactcgaattgctgccaatttcaat tttggaggaaactaa |
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Protein
| Protein ID | pfu_aug2.0_1080.1_01368.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01368.t1 MGVPKFYRWISERYPCLSEVVKEFQIPEFDNLYLDMNGIIHVCSHPDDGNPHFRITEEKIFRDIFHYLEIYMSAREAEEL ERKARESGEVLPTEKRFDSNCITPGTEFMVRLQEQLKYFVTSKISNDPLWHTVDVYLSGHETPGEGEHKIMDFIRQQKSE PSYDPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGHKDKNKRPATPEETTFHLLHLSLMREYLDFEFESLKDSL PFGYDLEKIIDDWVLMGFLVGNDFIPHLPHLHIQHDALPLLWKTYMNILPECGGYLNDGGHLNLERFEQYMKELAKFDID KFEETFSDLKWLETKIEGKAVNMEAANVADEIKARKMRKENANKFAALQDTEEDGLGDEFLPTSQKVSAATTPITPDTPD SDDEDDINTFDEEFTLHKKHYYMTKMEYENVDKEVLRDQSEGYIRAIQWILLYYYEGVPSWSWFYPHHYAPYISDVTDFK DMNIEFDLSTPFLPFQQLMAVLPAASKELLPEPYQKLMTQDYSPVIDFYPVNFQTDLNGKQQDWEAVVLIPFIDENRLLD AMRTVESKLSDPEKKRNSHGPCLLYNYSKEELEPYPSSLPGVFPDIVINHARLTKIPLEAFLVDKKKLWKGLLPGVKLDV YFPGFPTLKHLPHRAFLKKDGVKVFQHCSKNENMLLEILSEDEQVPSLSTVASEYVGKTIYVAWPHLYEAKVISVADREE RKVPNGKTKYNIQREPLGEDSAAIWCSQIKSLTDRYKDRLGIIVGDTYYILNVQPMIGRKYICGSHGVITHEKQFSKDTV PFLLQTTVKDIAVHDPAFCQFKTLRELFPVKEMVFMLGWPHYGGQGEVMDTEEGESPRVRINVIIPEEPKLDKFAYNSER YSQQFFPGYIAAQRAGISSHFLSRITGSIFVKPGSADNPQEGHNINIGLNMKFTKRSEEMPGYTKQTTDGWTYSQKAIST VSEYMQRFPEIVEYISNNDRNKGDVFYEEDLFGDTGVTLKQVQDYLKSLPIAQIKTQKTGTDNLDEGIIKAIEQEVDRVQ DINRKGKRVKMQVKPHLLFRPIIGQGGQVPDLSAKYYLFDRVVNVRNGYSVPFGLRGTVVGIHKGEKESDVIYEVVFDEA FQGGLTIRCSEGRGYRVPPAALINITYGERKNGARADPVASQQNSYERTQNYHTSQPQYPRQGSYNQNAWQQGQSSRGYN EAVTNDYNRQGSYSNFKNRNDNRAFYNENYHNDYDEDYNYAGYDTSNRKRQQYDKNVNVRSPRGKNQHDKNPGVMGSPRG NQQNQRQAQKESVHKHPGANENQPDKPKTPATKPDSLNLRQQSFDGSESAAPPMFVTPKISPGRRDPRRDSGGGGQSKIY HDSHNSEFANMWKELQTGANESGKAPSSGKDENKGPTLLQAAESLPKVPSPVVNHSETVESKREVQEEKKTVTLDSLFKE ASKVKSEEDQFAAMFKSLQISAEKKEETTTKPAQNHGIVEESTNALKQMLKIGSEDNGLTDSGIKDSGKKDSDKNDSGIK DVTEEVTSEPSKTYGRQVSLQELFEGVKGQLPATNTVAPAQIHKSPPQGAGGGGHPTVSPTKQAPAAHQYRGAPPQNRFS KPHQKSQQPPHQPQQPGGPNRFPGHHKRNPVMELKNWCQTMGLREPKYDFFGQGAFRGPPVHPLMGGAMPQFPPPPSRQP SPRQQAPPRQFSSPNSAFKPVSAVLNGPYPYPNQYPNQRHYSQPPQNQYNQPNQFNNPRYTNQYEDRRGQQQPTNQNNRY NNRSAGKRQSQEKVNDRQMENSKEDERGKDDVTEKHAQSNPFIPMQVTRKTPQKRRDSESESRSVNPTETKSHKSQDKEV KSVVRNILPENTVTVNHSDKSEHVRNDVSCDEATLQTSNNKQTEEVKTPSKSERHVKEGSHTPSNKQPGKRRTRIAANFN FGGN |
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