Gene
| Gene Model ID | pfu_aug2.0_1080.1_01373 |
|---|---|
| Locus | scaffold1080.1 : 174246 ... 188088 : + |
| To GenomeBrowser | scaffold1080.1:174246..188088 |
| Genes list of scaffold | scaffold1080.1 |
| Synonym | pfu_aug1.0_5481.1_02017 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| caspase-2 | GO:0006915 GO:0050794 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1080.1_01373.t1 | 1 | 1 | CARD | 7 | 89 | 2.5e-17 | 62.5 | 6.9e-21 | 5.1e-17 | 61.4 |
| pfu_aug2.0_1080.1_01373.t1 | 2 | 1 | Peptidase_C14 | 146 | 165 | 8.5e-34 | 117.3 | 0.23 | 1700.0 | -1.6 |
| pfu_aug2.0_1080.1_01373.t1 | 2 | 2 | Peptidase_C14 | 213 | 456 | 8.5e-34 | 117.3 | 2.8e-37 | 2.1e-33 | 116.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1080.1_01373.t1 | gi|573909546|ref|XP_006642491.1| | PREDICTED: caspase-2-like [Lepisosteus oculatus] | 0.0 |
| pfu_aug2.0_1080.1_01373.t1 | gi|557027182|ref|XP_006013688.1| | PREDICTED: caspase-2-like [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1080.1_01373.t1 | gi|696996853|ref|XP_009564969.1| | PREDICTED: caspase-2 [Cuculus canorus] | 0.0 |
| pfu_aug2.0_1080.1_01373.t1 | gi|514731969|ref|XP_005016487.1| | PREDICTED: caspase-2 isoform X1 [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_1080.1_01373.t1 | gi|694830603|ref|XP_009459864.1| | PREDICTED: caspase-2 [Nipponia nippon] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1080.1_01373.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01373.t1 atggatgagattcacaaatcagccttgaagagaactcgagtcgctctagttgaagatttggacgtagaccacatctatga tcatctcttatcagaggaaattttcacatcactgatgttagagtacataaagggagaaagaaatagaattgataaaacaa gacgactccttgacgatcttccaaggcgaggtccattagcgtacaaaaaattcttgatttgtctacgaaagtgtgaatac ggctttttagctgataaaatcgagcacaatgaaaaccagatacgtaaagacaaagggttagtgagtacacatgtggaaca acctaaaagtgaggaaaacagcgcaatgcacatatcgtctagtttccagtcgctgagtaatgttgtcagtgcaggaggtg atatgaacttcctgagctcagctacaagctccgttagtcggcccacctcatcacggagcccttcagaaagctctagctta gagatggcatcattgtcaacaagtgaaccaagcagcagctcacatagtaatgctcatcctgaggacgacataactctcag tatcctggtgttacactgtcgacgctgtcttcaactcagtctacataagagttatagaatgaacagtaatccccgtggat tagctctcatcatcaacaacaagaaattcaaggacatgcaggagaggctcggcacggagaaagacggagatcgactgaaa gttatgttccatactatggggtgtggagttaaaatgataaatgacgcatctctaacggaaatgaagcggcatctcaggga gtttgctacacatgaggatctagataaggtggactgtctgtttgtggttttactgtctcacgggaaggaaaatggaggag tctgcggcacggatggacacgatatctccggacaggaaatcatggagatattctcggcacagaattgtcctgcgatgata aacaagccaaaaatgttcattataaatgcatgccgaggagagagagatggcagtagcattcccataggaagtcagggagc gagcggtaacgtacatacagaccatgtggaaagggaggtaaatcctgtaggacgtacggcatctatggcacctacattac cattaccacagagagtggtcaatcatcaggatatgatagctgcctactctactttccctggtcatgtggcgtacaggaat actgccgatggaagttggtttatacaggacttggttaaagtattcacagaacactggcacgaagagcatatcctagatct acttactcaggttaaccaagcagtgtccaagagagaggacgaggattttgctcagataccgtttccgtcaagctctctaa ccaagaagtggtacctcaatccgcctctgtaa |
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Protein
| Protein ID | pfu_aug2.0_1080.1_01373.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1080.1_01373.t1 MDEIHKSALKRTRVALVEDLDVDHIYDHLLSEEIFTSLMLEYIKGERNRIDKTRRLLDDLPRRGPLAYKKFLICLRKCEY GFLADKIEHNENQIRKDKGLVSTHVEQPKSEENSAMHISSSFQSLSNVVSAGGDMNFLSSATSSVSRPTSSRSPSESSSL EMASLSTSEPSSSSHSNAHPEDDITLSILVLHCRRCLQLSLHKSYRMNSNPRGLALIINNKKFKDMQERLGTEKDGDRLK VMFHTMGCGVKMINDASLTEMKRHLREFATHEDLDKVDCLFVVLLSHGKENGGVCGTDGHDISGQEIMEIFSAQNCPAMI NKPKMFIINACRGERDGSSIPIGSQGASGNVHTDHVEREVNPVGRTASMAPTLPLPQRVVNHQDMIAAYSTFPGHVAYRN TADGSWFIQDLVKVFTEHWHEEHILDLLTQVNQAVSKREDEDFAQIPFPSSSLTKKWYLNPPL |
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