Gene
| Gene Model ID | pfu_aug2.0_1088.1_28036 |
|---|---|
| Locus | scaffold1088.1 : 3452 ... 12415 : - |
| To GenomeBrowser | scaffold1088.1:3452..12415 |
| Genes list of scaffold | scaffold1088.1 |
| Synonym | pfu_aug1.0_8700.1_53218 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1088.1_28036.t1 | 2 | 1 | Hist_deacetyl | 133 | 186 | 4.3e-09 | 36.0 | 2.8e-07 | 0.001 | 18.4 |
| pfu_aug2.0_1088.1_28036.t1 | 2 | 2 | Hist_deacetyl | 329 | 383 | 4.3e-09 | 36.0 | 7.8e-07 | 0.0029 | 16.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1088.1_28036.t1 | gi|676473992|ref|XP_009060000.1| | hypothetical protein LOTGIDRAFT_209871 [Lottia gigantea] | 4.0e-15 |
| pfu_aug2.0_1088.1_28036.t1 | gi|72089413|ref|XP_791175.1| | 3.0e-14 | |
| pfu_aug2.0_1088.1_28036.t1 | gi|556967532|ref|XP_005992936.1| | PREDICTED: histone deacetylase 8 isoform X1 [Latimeria chalumnae] | 1.0e-12 |
| pfu_aug2.0_1088.1_28036.t1 | gi|585654504|ref|XP_002733814.2| | PREDICTED: histone deacetylase 8-like [Saccoglossus kowalevskii] | 1.0e-12 |
| pfu_aug2.0_1088.1_28036.t1 | gi|47087397|ref|NP_998596.1| | histone deacetylase 8 [Danio rerio] | 5.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_1088.1_28036.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1088.1_28036.t1 atggaagtagccactacctcacagggtcgtcatccagtggctgaaccagatccaggttccaaggataacggtagtaaatg tatatatgatatagacagtcaagatgatgtacatcctcaagcccttacgcccctgaggtactctcggaaaccgaagtcgt taaaaggagttgaccagctacacgatgttgagaaagaaaacgttgaacatgctgctggaaatcaggatgagaaggagaaa aactgggaacagtcttcatgtagtgtcacagctggcaggtctgcaacgatcagtgaagtaaaaatgacatcggcagcaat tgctgtcgtctatgtatatagtcctgagctactacacatcagtagccaaatggagaaaattcaagggcgggcatttttgg tccatagccttatagcagcttacaacttagccagctgtttgaaggtggttcccccacgccatgccacagaaaaagagata ctcagcttccattcagaagaatacgtgaaatttctgcacaaagtcagccaaactgatgatgatgagaaatttgaagagga ggcaaatcagtttgggctaaatggaaagggtgactttgcaatggaagtagccactacctcacagggtcctcatccagtgg ctgaaccaggtccaggtaccaaggataacggtagtagatgtatatatgatatagacagtcaagatgatgtacatcctcaa gcccttatgcccctgagatactctcggaaaccgaagtcgttaaaaggagttgaccagctacacgatggtgagaaagaaaa cattgaacatgcttctggaaatcaggatgagacggagaaaaactgggaacaatcttcatgtagtgtcacagctggcaggt ctgtaacgatcagtgaagtaaaaatgacgtcggcagcaaatgctgtcatctatgtatatagtcctgagctactacacatc agtagccaaatggagaaaattcaagggcgggcatttttggtccatagccttatagcagcttacaacttaaccagctgttt gaaggtggttcccccacgccatgccacagaaaaagagatactcagcttccattcagaagaatacatgaaattcctgcaca aagtcagccaaacagatgatgatgagaaatttgaggaggaggccaatcagtttggactaagtatgtcaattgacttttag |
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Protein
| Protein ID | pfu_aug2.0_1088.1_28036.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1088.1_28036.t1 MEVATTSQGRHPVAEPDPGSKDNGSKCIYDIDSQDDVHPQALTPLRYSRKPKSLKGVDQLHDVEKENVEHAAGNQDEKEK NWEQSSCSVTAGRSATISEVKMTSAAIAVVYVYSPELLHISSQMEKIQGRAFLVHSLIAAYNLASCLKVVPPRHATEKEI LSFHSEEYVKFLHKVSQTDDDEKFEEEANQFGLNGKGDFAMEVATTSQGPHPVAEPGPGTKDNGSRCIYDIDSQDDVHPQ ALMPLRYSRKPKSLKGVDQLHDGEKENIEHASGNQDETEKNWEQSSCSVTAGRSVTISEVKMTSAANAVIYVYSPELLHI SSQMEKIQGRAFLVHSLIAAYNLTSCLKVVPPRHATEKEILSFHSEEYMKFLHKVSQTDDDEKFEEEANQFGLSMSIDF |
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