Gene
| Gene Model ID | pfu_aug2.0_1088.1_28041 |
|---|---|
| Locus | scaffold1088.1 : 74956 ... 80154 : + |
| To GenomeBrowser | scaffold1088.1:74956..80154 |
| Genes list of scaffold | scaffold1088.1 |
| Synonym | pfu_aug1.0_2312.1_51616 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1088.1_28041.t1 | 4 | 1 | zf-C3HC4_3 | 29 | 82 | 4.7e-07 | 29.3 | 3.5e-10 | 4.7e-07 | 29.3 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 1 | zf-RING_2 | 30 | 82 | 2.4e-07 | 30.4 | 1.8e-10 | 2.4e-07 | 30.4 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 1 | zf-C3HC4 | 31 | 81 | 2.5e-08 | 33.4 | 1.8e-11 | 2.5e-08 | 33.4 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 1 | zf-C3HC4_2 | 31 | 81 | 1.0e-07 | 31.8 | 7.6e-11 | 1.0e-07 | 31.8 |
| pfu_aug2.0_1088.1_28041.t1 | 2 | 1 | zf-RING_5 | 31 | 82 | 4.0e-06 | 26.4 | 3.0e-09 | 4.0e-06 | 26.4 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 1 | zf-RING_UBOX | 31 | 60 | 9.5e-06 | 25.2 | 7.1e-09 | 9.5e-06 | 25.2 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 2 | zf-C3HC4_3 | 118 | 153 | 4.7e-07 | 29.3 | 1.3 | 1700.0 | -1.3 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 2 | zf-C3HC4 | 121 | 158 | 2.5e-08 | 33.4 | 1.1 | 1400.0 | -1.0 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 2 | zf-C3HC4_2 | 121 | 155 | 1.0e-07 | 31.8 | 2.9 | 3800.0 | -2.0 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 2 | zf-RING_2 | 121 | 155 | 2.4e-07 | 30.4 | 3.4 | 4600.0 | -2.5 |
| pfu_aug2.0_1088.1_28041.t1 | 2 | 2 | zf-RING_5 | 121 | 155 | 4.0e-06 | 26.4 | 0.26 | 350.0 | 1.0 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 2 | zf-RING_UBOX | 139 | 149 | 9.5e-06 | 25.2 | 7.5 | 10000.0 | -3.7 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 3 | zf-C3HC4_3 | 187 | 214 | 4.7e-07 | 29.3 | 4.4 | 5900.0 | -3.0 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 3 | zf-C3HC4_2 | 188 | 213 | 1.0e-07 | 31.8 | 3.5 | 4700.0 | -2.3 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 3 | zf-RING_2 | 196 | 219 | 2.4e-07 | 30.4 | 0.082 | 110.0 | 2.7 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 3 | zf-C3HC4 | 401 | 407 | 2.5e-08 | 33.4 | 3.7 | 5100.0 | -2.8 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 4 | zf-C3HC4_2 | 402 | 407 | 1.0e-07 | 31.8 | 6.3 | 8500.0 | -3.1 |
| pfu_aug2.0_1088.1_28041.t1 | 3 | 3 | zf-RING_UBOX | 402 | 406 | 9.5e-06 | 25.2 | 2.4 | 3300.0 | -2.1 |
| pfu_aug2.0_1088.1_28041.t1 | 4 | 4 | zf-C3HC4_3 | 611 | 619 | 4.7e-07 | 29.3 | 5.9 | 8000.0 | -3.4 |
Transcript
| Transcript ID | pfu_aug2.0_1088.1_28041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1088.1_28041.t1 atggcgcaatccgtgactgctgacgaggcgaagcaagacgattcactcgataattctggtgattcagggattcgaaaaga tcttacaacatgttcgatttgtttcgaaacattcaaaaggccaaaatatttgccgtgcttgcactcttattgtgaatcat gcttacaatcttacattgactccacaaaactgaaagtgaaagaagactccggggaaattccaggaattgtctgtccactg tgtaggctgttcgtaaagttaccaggcggatgtgagtggaatgagtgggcatattcgttgccaatgaatcatttactagc atcagtaattgatgctgatactacaaaaaagtccaaaatatgtaaagcatgtgctagagaaaatgaaagaaaaagtgcca tatgtgctacggcatggtgcatggattgtgcagaggggttctgtgaactgtgtgagcgccaacaccgtaaattcaagtat ggggaaaatcataaagtggttgacattggagacatgcttcaattgcagcagtctattatttcacaatcacatgaaattat gtgtcaatctcatcccaaaaaggcattggaggcttattgtgaagatcattctgttgtgtgttgtttaacatgtgccatgc tgaatcacaggaaatgtgaccaagtagggacaatagaaaatgcagtccaagaaaagaagaaaaagggagaggatactgcc ctgaaagaatcatttgttggcatgaaaaaatcacttgcatcagcaaaggaagcagttgaagggaatctactagcattgag agggcaagtatctgctattgagtcaagtatccaccaagaatatgatgccttcatcaaacatggacaaagacttagagatg agaaacttgaggacctcaggtcactagaaaagaccctcattccagcagaagagagtaaacgtgatgaaatcttgggcaaa atatgtgcattagaaaatgacttgaagctcctcgatacaactgtagatttagcacctgatgcacagtttcttctgaattt caatcaactgctggagcagaagtcagtgatacaggtatttcttgaaaaagaggtactagaacaaaccaaactatgtgaaa tgaagtttgagaaatcatcagcgttgttcagtatgtctggtgtgatggatagctatggagagatgattgttgaaaaaagg aatttggcatgtggtcacagtgatgtcatcgtagaccctggtcccagtattgttgatctcgcacaagtgaaaccaaagct gatgcatacagtaccccttgaaggtaaaggaattataggaatttgcatttttggcgacaattttgtgattgtttctaaag aatctcaagcagttgaattactcaacagtaaaggaacctgtctatcttcgatgatgttggatagcaatgcagttgacctg aagatgttcaacaaatccgaaggtgcagttttggagaagaaaaagataacgatcttcaaagtacttgaagaaaattcact gcataggatttcagagctcagtcttcaagaggatgctgatgcaatttcttatcatgatcctcacctgtacatagcagcta agagtgaaataacagtaaaagacataaacatgaaaacagttagaaagataagattatattatcctgtagttcagtttgaa gtccaatcaggtggaaatattatttttagcaatactgagtttgatgacatattttgtattagaccagatgcatctgatgt atggcaatatagtcatgaaaatttaactcatactgagggagttgctttagatagcactggaaatgttttggtttgtggca agaattcatgcaatgtttaccaccttacacaaaatggtgaatttcacagtgtgtttctttcactaagtgaaatgcagtct tctccaaagtgcattagcatcaataagtatgaacaaaaactagctgttggatgtgaaaatgctgtattggtttatgagat tagataa |
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Protein
| Protein ID | pfu_aug2.0_1088.1_28041.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1088.1_28041.t1 MAQSVTADEAKQDDSLDNSGDSGIRKDLTTCSICFETFKRPKYLPCLHSYCESCLQSYIDSTKLKVKEDSGEIPGIVCPL CRLFVKLPGGCEWNEWAYSLPMNHLLASVIDADTTKKSKICKACARENERKSAICATAWCMDCAEGFCELCERQHRKFKY GENHKVVDIGDMLQLQQSIISQSHEIMCQSHPKKALEAYCEDHSVVCCLTCAMLNHRKCDQVGTIENAVQEKKKKGEDTA LKESFVGMKKSLASAKEAVEGNLLALRGQVSAIESSIHQEYDAFIKHGQRLRDEKLEDLRSLEKTLIPAEESKRDEILGK ICALENDLKLLDTTVDLAPDAQFLLNFNQLLEQKSVIQVFLEKEVLEQTKLCEMKFEKSSALFSMSGVMDSYGEMIVEKR NLACGHSDVIVDPGPSIVDLAQVKPKLMHTVPLEGKGIIGICIFGDNFVIVSKESQAVELLNSKGTCLSSMMLDSNAVDL KMFNKSEGAVLEKKKITIFKVLEENSLHRISELSLQEDADAISYHDPHLYIAAKSEITVKDINMKTVRKIRLYYPVVQFE VQSGGNIIFSNTEFDDIFCIRPDASDVWQYSHENLTHTEGVALDSTGNVLVCGKNSCNVYHLTQNGEFHSVFLSLSEMQS SPKCISINKYEQKLAVGCENAVLVYEIR |
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