Gene
| Gene Model ID | pfu_aug2.0_109.1_30217 |
|---|---|
| Locus | scaffold109.1 : 82606 ... 125742 : + |
| To GenomeBrowser | scaffold109.1:82606..125742 |
| Genes list of scaffold | scaffold109.1 |
| Synonym | pfu_aug1.0_3001.1_23139 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_109.1_30217.t1 | 1 | 1 | Patched | 254 | 555 | 2.0e-15 | 55.8 | 6.2e-19 | 3.0e-15 | 55.2 |
| pfu_aug2.0_109.1_30217.t1 | 2 | 1 | Sterol-sensing | 307 | 441 | 1.6e-11 | 43.8 | 3.3e-15 | 1.6e-11 | 43.8 |
| pfu_aug2.0_109.1_30217.t1 | 2 | 2 | Sterol-sensing | 511 | 528 | 1.6e-11 | 43.8 | 0.56 | 2800.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_109.1_30217.t1 | gi|145341836|ref|XP_001416009.1| | predicted protein [Ostreococcus lucimarinus CCE9901] | 1.0e-26 |
Transcript
| Transcript ID | pfu_aug2.0_109.1_30217.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_109.1_30217.t1 atggtgtctgagactcaaatcgccgacatacataaactgaaatggatcttaggtcaaagagacacgccctcacaaagtat atcagtcagcattcacctttctgctttactgacaacagctgttttaattctgtatggatatgatgtgtttccaatggact tcaaaggtctggcgatggtacttagaaatgatgaaacaaatactaaagctctcgctttcagagcaagacatcattatcct aataaatatacgaggataacaaagaaaggtccccttggtgactgggatcgtggtactattgctgactcctttgaggttat tctacagacagatggacagcatatattcagtatggatatgttgcggaaaatgaaagaaatagaagattttgtgtcgtctc taaaaggatatacgagtgtttgtctccttcaactatcaggacagtgtcatcaaccactatctgtaataagaaacatggag actgcaatagctgaacgtggttttcctaataccatgaactctactgttatcaatagaatgatcagagaggtgatttgcga tgcatatagagataaaaagacatcaaataagttgaagattttcttggaaaatgggtacgatccttgcaatgcgaattcaa ctgcacaaatgacaaggatgttcttccagtttggattcggtaagaatgaatccagaatctacaaaacctcaaagtgcaca aggagtatttttcaaaacaacgtgttaaaaccagctatggataccataagacaaaacttttcacgtgacggaatcaatct acactacttcagccatgatatcttcttaacggaagctggtgaccaagctatgaaggacgcttggttaggagttggaggtt ttctctttatattcactataatgtggtttcagacgcaatcattctggataacatttatgggactttatagtatcattacc agtttcctcatagcaaatctcgtgtacagattctgttttggatttacttattttgggtattttcacgtggttgcaatctt cattatcattggaatcggtgcagacgatgtctttgtgttttacgattcatggcgattgaccgcatctaaatcatatcctg atttagcttatcgcttgacagatttttacagaaatgcatccagaactacttttgttacctctttaacaacgactttagtg ttcattgtcacgagtttttcgcctttactatgtgtgaaaacattcgggctattctcggctttgctagtttctataaacta cttattcgatcttatatactttccaacagctattacaatatacactctcaagataaagcccttcactaaaagggtataca agatattcaaaaagattctttcgtacatattttatggatctattgaatccccaaatgatttcacgaaatcccgtcatatg acacattcaataagtacacctcgaagcagaaagaagggaatacttgttaacttcttttcaaaacattttcatgacttcat taccaatcggtatatgtctgtaggagtactggtatcgtttctggcaacatcagttttctttatattctttgccacaaagt tggaaatatcaacagggacggttgaactgttcaaggagtctaacttttttggtaaagcctataatctacatcgacaaggt ttccagcgattattagatacggactatactgatgtttatcttctctggggcatgtatccacaagacacatcatcttgtaa ccttaagtcatccgacttttgtcatggatcagctttatgggataagaattgcaacccctcttctgcagaagctcagattt ctttgaaaaatatgtgcaatcaactaagatcaatgtctccagaagagtccaaattattgatgatacgacaaagtgaagat ggtactaacctagacattgattgctttacagttccaatgttagaattcttaaagaatcagagtgcagatcctcttgacat tcccttagatgaaagacaaatgtcatctttgataagcaatagcacagatgcatctcaagagttttccaataagtccttgg gatggcttgagagaaaacagggtgctctggaattagtgaacaggacagtagagtttgcaacagtagatttagtgtcgtgt tcaacatgccttcacatgaacatttctcttttcaacatgccccaaaacacgatcgatcaactgaaaaccatgttctcttc aatggaaaacccgggatgtgacgcgggcactgctcaaatcactccatgccaaagtactctcagccagagaactaaatgta tgaaaactaccatacgtggaaggttcgttggcatgaaaaatttgtatccagaggctgtcatggaacaaatagtcgtagta cgcgcatgcgcaccgcggcctctcacagaaccagataaatgcatgaccttagatgagctagatcccgaaacaaagacgac ggtcacagcgcagttagagcaagcgaaggcacaatgggagagccttagccttaccggagacacatgcttcaaaggcgcag gagatgttccttataaaccggaaaccaaagatccggacaatggttctgggcgtttgttcaacatgtcacatttcctgatc actctgctggcgatgaccgcaggaaaactgatgaagaccatgtga |
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Protein
| Protein ID | pfu_aug2.0_109.1_30217.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_109.1_30217.t1 MVSETQIADIHKLKWILGQRDTPSQSISVSIHLSALLTTAVLILYGYDVFPMDFKGLAMVLRNDETNTKALAFRARHHYP NKYTRITKKGPLGDWDRGTIADSFEVILQTDGQHIFSMDMLRKMKEIEDFVSSLKGYTSVCLLQLSGQCHQPLSVIRNME TAIAERGFPNTMNSTVINRMIREVICDAYRDKKTSNKLKIFLENGYDPCNANSTAQMTRMFFQFGFGKNESRIYKTSKCT RSIFQNNVLKPAMDTIRQNFSRDGINLHYFSHDIFLTEAGDQAMKDAWLGVGGFLFIFTIMWFQTQSFWITFMGLYSIIT SFLIANLVYRFCFGFTYFGYFHVVAIFIIIGIGADDVFVFYDSWRLTASKSYPDLAYRLTDFYRNASRTTFVTSLTTTLV FIVTSFSPLLCVKTFGLFSALLVSINYLFDLIYFPTAITIYTLKIKPFTKRVYKIFKKILSYIFYGSIESPNDFTKSRHM THSISTPRSRKKGILVNFFSKHFHDFITNRYMSVGVLVSFLATSVFFIFFATKLEISTGTVELFKESNFFGKAYNLHRQG FQRLLDTDYTDVYLLWGMYPQDTSSCNLKSSDFCHGSALWDKNCNPSSAEAQISLKNMCNQLRSMSPEESKLLMIRQSED GTNLDIDCFTVPMLEFLKNQSADPLDIPLDERQMSSLISNSTDASQEFSNKSLGWLERKQGALELVNRTVEFATVDLVSC STCLHMNISLFNMPQNTIDQLKTMFSSMENPGCDAGTAQITPCQSTLSQRTKCMKTTIRGRFVGMKNLYPEAVMEQIVVV RACAPRPLTEPDKCMTLDELDPETKTTVTAQLEQAKAQWESLSLTGDTCFKGAGDVPYKPETKDPDNGSGRLFNMSHFLI TLLAMTAGKLMKTM |
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