Gene
| Gene Model ID | pfu_aug2.0_109.1_30226 |
|---|---|
| Locus | scaffold109.1 : 455478 ... 487089 : + |
| To GenomeBrowser | scaffold109.1:455478..487089 |
| Genes list of scaffold | scaffold109.1 |
| Synonym | pfu_aug1.0_24183.1_62283 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_109.1_30226.t1 | 3 | 1 | RGS | 40 | 103 | 6.4e-09 | 35.9 | 4.7e-07 | 0.007 | 16.4 |
| pfu_aug2.0_109.1_30226.t1 | 3 | 2 | RGS | 365 | 449 | 6.4e-09 | 35.9 | 3.2e-05 | 0.47 | 10.5 |
| pfu_aug2.0_109.1_30226.t1 | 3 | 3 | RGS | 743 | 792 | 6.4e-09 | 35.9 | 0.0033 | 49.0 | 4.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_109.1_30226.t1 | gi|260815363|ref|XP_002602443.1| | hypothetical protein BRAFLDRAFT_117020 [Branchiostoma floridae] | 3.0e-11 |
| pfu_aug2.0_109.1_30226.t1 | gi|704577165|ref|XP_010187311.1| | PREDICTED: regulator of G-protein signaling 22, partial [Mesitornis unicolor] | 4.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_109.1_30226.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_109.1_30226.t1 atgaaacttgcgaaggaagtagagaaaaaatataaatcttcatgttcctcattacgcattgcttcttccaggtgggaagg aaaacaagaagataaagaagtgaagtctgtattttgtcgtaacatccttggtcatgccctcggaatgcgcatgttccgcg agtatttgtccggaacttccggtgagaaaacctttcgttgttggtgtgacatagagagatggcgactatcggcagatggt agtaaaacaaaaactgaaatgcttcacagaataaagactctatatatatctgacggtggacagagtgatttattatcgca tggaaaaacagaggcatttagtggaagactaaatttccagctgataccggaagctgaagtggaaaaagaattgatatcaa aagtaggatgtgatcccggacccgtaatcgttgaatccgacgaaggactgattcaactccagaaaatattgttggctttt ctacgaaggtactgggtgccccgttacgtcatacatctgtacaatacgctacctaaagattccttgtcaatattaaatag agaaacaccgtttgacatcacagcccagtcacgtcagcgtcatttacgctgtaaacttatgttcccgcgcatctacagta gtaagacttccgcccccggttcgccagtgacgcctgtctttgtgtcaaatgacgccagtcagatgccgactgtaggagcc gagtcaagtctttcttgtcaaatagttcaatctgaggaggcttcttcgttttccctacccgaagagcacagcgaaaagga ggacacaaacctggatccacaagagttactagcattgtggggaggtcatccactgccaagagatgaaggagaaatcgata atgatttaggcaaagtgtcatcggatgaaaatgctctcaaagaacttgatagttgggaaaaaatacagacgccatcttct ccactgagcgcgttaaaaagtccattaaaggcggtattctcacttccgcttacgtcatatatggccggtagacgtcgctt ctccttaggacgatttcctggtattgaaaccagaatgttgtgttcctttgcctccgatcctctcgccggaagtcctttcc tacaatttctgaagtctcggtacttacttcaggatatgaagttgttagagttctggaatgatgtcaggcattttcttgac actgatgaaaattatgtagatccattcggaactcccatgaagaaggcattgggaaagataatcgcagagaagtatttgat ggaaagtccagacagaaatgacatatttccggaagctctaaaaatgtcaatattacgtagtctgagtttcaaggatgaca tcacgctgctatctaccgttcaggacctcatcacaggatgccgcaagaagcctttcgatcgtaacgtgatagaatcaaac acatggcccgaaaacatcgagaaggacaccctgttcttctgtaacgtgaaatctccaccaccggcggcaaaccaagcatc aaatggttctgatgacgtcagaagtcacagtgccgatcccaaaacctctttgtctacgtcatccagaccatggagtcggt ttacagaatccggaacgtttgctctctctgaagaccatttcgttcgcgcgtttgagtacgctgtcgtctgctcagaatac ggtcgttctgggatgtattcggacaaacgacatacttctgaggaactgatcgatgccttgtatagtgattatgggagcat acatattcaacgggaaccggctgttagaaatgaggctttgcacaagttgacccataaaccaaagatcgatatagaaaaca tccgagtgtcaagaaaggtgatgtacgaaacaccggaaatggttttagagaaagtcggcgaaagattccgaagtaacaga cttgtactgcgcaggcgcggaattttgattgaacgtccaccaagaccaagtagaactaaacgaataaaagttacgaaaat tccagaaattgttcccctgaaaaatccttatgaagttaaactcctggaattatacctgaaaaacgaacaagaaaaagact caaagatgcaacgggtacaagagaagtccatgttgacgtccagcacagtggctgcctttcagactagagttgttctcaga aacagacttatcatcatgaataaacttccaatggatctgctattttggaacgaagtaacaataagaggtaccacgtgtac aggtatgtgtaaaagttaccttcagtcagaagtagtaccacgtgtacaggtaaacgtccccgtagatttggcagcaaaca tagcaaaccacctgacaacacaaggacctaccagggggttgttccacgatgctaccatactactgttcccaatactgtat ttcttctggagaagattcagagacgaatggcttaaaggtcatgatcccgaggcgttttatacgcgcttgcagtcacagct aacaagaccctggcgggcatccacgccccacaaagacacggagggtcctgattatatcaacattagggagtcgaactgcc agatcataaatgcttatctaccagaggaagaatcgtttagaataagcttttccattactgatggagtccggtacatgtac cccggagctaaggcacctcaacgcacagggaggaagtcaagaaaaggcgagcggggtaaagacagtcagctcagcgtaac cagtgaatcgcctaaaaaacaaaacaggaaactgagtaaagcaatggacacactgtacgaagggagtgttcgaaacttag atatggagtcggaatatctcagttcactcgataaaaaggagttccctcctgaggaacccttagagcagaacaaaccgcct gaggtcaagcgtgttcgtccgtccgtgcgtcagggtagagcactgaagataagccagctggttgaagctctgaataaggg tgctactggatcaataaaacaacgaacacgaacttttgatgaggtggtacgagcagcactcaccagcaggcttcagtcta caacaccagaacatactgatgcgcaatcattcaactcaatggtcatatag |
|
Protein
| Protein ID | pfu_aug2.0_109.1_30226.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_109.1_30226.t1 MKLAKEVEKKYKSSCSSLRIASSRWEGKQEDKEVKSVFCRNILGHALGMRMFREYLSGTSGEKTFRCWCDIERWRLSADG SKTKTEMLHRIKTLYISDGGQSDLLSHGKTEAFSGRLNFQLIPEAEVEKELISKVGCDPGPVIVESDEGLIQLQKILLAF LRRYWVPRYVIHLYNTLPKDSLSILNRETPFDITAQSRQRHLRCKLMFPRIYSSKTSAPGSPVTPVFVSNDASQMPTVGA ESSLSCQIVQSEEASSFSLPEEHSEKEDTNLDPQELLALWGGHPLPRDEGEIDNDLGKVSSDENALKELDSWEKIQTPSS PLSALKSPLKAVFSLPLTSYMAGRRRFSLGRFPGIETRMLCSFASDPLAGSPFLQFLKSRYLLQDMKLLEFWNDVRHFLD TDENYVDPFGTPMKKALGKIIAEKYLMESPDRNDIFPEALKMSILRSLSFKDDITLLSTVQDLITGCRKKPFDRNVIESN TWPENIEKDTLFFCNVKSPPPAANQASNGSDDVRSHSADPKTSLSTSSRPWSRFTESGTFALSEDHFVRAFEYAVVCSEY GRSGMYSDKRHTSEELIDALYSDYGSIHIQREPAVRNEALHKLTHKPKIDIENIRVSRKVMYETPEMVLEKVGERFRSNR LVLRRRGILIERPPRPSRTKRIKVTKIPEIVPLKNPYEVKLLELYLKNEQEKDSKMQRVQEKSMLTSSTVAAFQTRVVLR NRLIIMNKLPMDLLFWNEVTIRGTTCTGMCKSYLQSEVVPRVQVNVPVDLAANIANHLTTQGPTRGLFHDATILLFPILY FFWRRFRDEWLKGHDPEAFYTRLQSQLTRPWRASTPHKDTEGPDYINIRESNCQIINAYLPEEESFRISFSITDGVRYMY PGAKAPQRTGRKSRKGERGKDSQLSVTSESPKKQNRKLSKAMDTLYEGSVRNLDMESEYLSSLDKKEFPPEEPLEQNKPP EVKRVRPSVRQGRALKISQLVEALNKGATGSIKQRTRTFDEVVRAALTSRLQSTTPEHTDAQSFNSMVI |
|