Gene
| Gene Model ID | pfu_aug2.0_10911.1_06452 |
|---|---|
| Locus | scaffold10911.1 : 1 ... 5295 : + |
| To GenomeBrowser | scaffold10911.1:1..5295 |
| Genes list of scaffold | scaffold10911.1 |
| Synonym | pfu_aug1.0_5986.1_16809 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_10911.1_06452.t1 | 1 | 1 | COLFI | 110 | 263 | 1.0e-38 | 132.9 | 1.69978e-42 | 1.3e-38 | 132.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_10911.1_06452.t1 | gi|524871684|ref|XP_005092613.1| | PREDICTED: collagen alpha-1(XI) chain-like [Aplysia californica] | 2.0e-40 |
| pfu_aug2.0_10911.1_06452.t1 | gi|657800559|ref|XP_008327410.1| | PREDICTED: collagen alpha-1(XI) chain-like [Cynoglossus semilaevis] | 8.0e-31 |
| pfu_aug2.0_10911.1_06452.t1 | gi|736212371|ref|XP_010777604.1| | PREDICTED: collagen alpha-1(XI) chain-like isoform X2 [Notothenia coriiceps] | 1.0e-30 |
| pfu_aug2.0_10911.1_06452.t1 | gi|736212367|ref|XP_010777603.1| | PREDICTED: collagen alpha-1(XI) chain-like isoform X1 [Notothenia coriiceps] | 1.0e-30 |
| pfu_aug2.0_10911.1_06452.t1 | gi|736212374|ref|XP_010777605.1| | PREDICTED: collagen alpha-1(XI) chain-like isoform X3 [Notothenia coriiceps] | 1.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_10911.1_06452.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10911.1_06452.t1 ggaccacctgggctacctggatcaaaaggagaatcgggtagttcgggtatcaaaggtgaaccaggtccacagggaccacc aggctcgcccggtgccccaggtgaagcccaggccttcccagcagatctgcttggtgccccattcaaggcccgtaggagaa gatcagcacctcaacagcaagctcaacaacaaaactatgcaacaacatccattaatgacatgtttgcagacatgggaagc aaaccattggagcttggtgaaggcgttacaatgcttgttggaaaaatgtttgagggattgtatgaactggacaaccaagt taacatgattatgaatcctaccggcaaaatagactaccctgctcaaacttgcaaagacatcaaaatgagttggcctgact ctaagaacggggattattggattgatccaaacggcggtgctataggagataagatgaaggtctggtgtaacatgacgggc gatggggctacctgtgtatatccattggatcgcacgagaaggtctcctcaggctttccacaaacttgagaaaaataataa tttcttcggaggattggaaaacggattttcgattgagtaccccgatgctattcagcttcgcttcctacgtgaacatagcg atcgcgccactcagacattcacgtactattgtaagaattctgtggcgtggaaaaacccagtgggtgataagagcaaggct ttgatcttagagggcgccaacaagttccagtttaagactgctaaatggaaaaacgtcatcgatggctgccag |
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Protein
| Protein ID | pfu_aug2.0_10911.1_06452.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_10911.1_06452.t1 GPPGLPGSKGESGSSGIKGEPGPQGPPGSPGAPGEAQAFPADLLGAPFKARRRRSAPQQQAQQQNYATTSINDMFADMGS KPLELGEGVTMLVGKMFEGLYELDNQVNMIMNPTGKIDYPAQTCKDIKMSWPDSKNGDYWIDPNGGAIGDKMKVWCNMTG DGATCVYPLDRTRRSPQAFHKLEKNNNFFGGLENGFSIEYPDAIQLRFLREHSDRATQTFTYYCKNSVAWKNPVGDKSKA LILEGANKFQFKTAKWKNVIDGCQ |
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