Gene
| Gene Model ID | pfu_aug2.0_1092.1_08162 |
|---|---|
| Locus | scaffold1092.1 : 168608 ... 181155 : - |
| To GenomeBrowser | scaffold1092.1:168608..181155 |
| Genes list of scaffold | scaffold1092.1 |
| Synonym | pfu_aug1.0_763.1_00473 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1092.1_08162.t1 | 1 | 1 | IIGP | 80 | 314 | 6.7e-39 | 133.7 | 3.99931e-42 | 8.5e-39 | 133.4 |
| pfu_aug2.0_1092.1_08162.t1 | 2 | 1 | MMR_HSR1 | 94 | 200 | 1.3e-06 | 28.2 | 1.8e-09 | 3.8e-06 | 26.8 |
| pfu_aug2.0_1092.1_08162.t1 | 2 | 2 | MMR_HSR1 | 265 | 294 | 1.3e-06 | 28.2 | 2.8 | 5900.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1092.1_08162.t1 | gi|558114354|ref|XP_006112704.1| | PREDICTED: interferon-inducible GTPase 5-like isoform X1 [Pelodiscus sinensis] | 8.0e-40 |
| pfu_aug2.0_1092.1_08162.t1 | gi|530656816|ref|XP_005314339.1| | PREDICTED: interferon-inducible GTPase 5-like [Chrysemys picta bellii] | 3.0e-39 |
| pfu_aug2.0_1092.1_08162.t1 | gi|641787253|ref|XP_008175680.1| | PREDICTED: interferon-inducible GTPase 5-like, partial [Chrysemys picta bellii] | 5.0e-39 |
| pfu_aug2.0_1092.1_08162.t1 | gi|641789051|ref|XP_008176381.1| | PREDICTED: interferon-inducible GTPase 5-like [Chrysemys picta bellii] | 8.0e-39 |
| pfu_aug2.0_1092.1_08162.t1 | gi|556976750|ref|XP_005995762.1| | PREDICTED: interferon-inducible GTPase 5-like [Latimeria chalumnae] | 4.0e-38 |
Transcript
| Transcript ID | pfu_aug2.0_1092.1_08162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1092.1_08162.t1 atgacacaagcacaggctccagtccttatccaaaggaacaaggataagaacaggacatcaaagatggcggtcagagatgt tgaagatattgagtttggatcggatgatgctgatagatacgccgataaaccttctgagtcgacagagagagacatacctt cagatgaagcgccatgggatgtagacagaataactgctaaactggattcatgtctgggtgaaaatgattacgacgggctt aggaaaaatatggaagccatgaaatcgacaaaattatccattgcagtaatgggtccatcttgcgttggaaagtcctcctt catcaacaacatgcttgggctgaaagaaggggatctaggcgctgcaacagttggagatggtgacacgactcagataagaa aagcttactcccatcctcaaatcaaacagttagaatattatgatctacctggatttggaaccccctttttcaaaatgaca gataactatctgagagaaattaaagtagaaagttacgatttctttctcatattttatagtgggacaatttcagaaggcga cgtgtggataatacagaaacttctcgatatgaaaaaaatgtttgccctggtgcgcacaagagctgatgaaatgaaaggaa ggtctaaacctttaaatcaaagcattatggaagcaaaggatagatgcgaaaccaacctgcgagaatttggcatcaaagtg aaagtaccgacatttattatttcaaatatagatgtcaacataggagaaatgaataacttatttcgcttcattaagagcag tttacctgaattgaaaagaatggcaatcacactccatgtgcaagcaaaaactgatgagatcatcgcacagaaagaagagc agcttctagacagcgcgtgggttgcggccctttgcatgggggttgctacagggcttccacttcctggtgttgatattcct ataaattatgtgcttcttggtgatgaaataaagtcttgtctactatcgcttggtttgagtgctgagatgtttgaaagaat accagaagatgtaaagattcgaatgaaaacaacatctactattcataaagatggattgaagagatatatactcttaaata taacgaaaattcctactattatttcatgtgctttgcttcaagaggctgttgagatctgtctgccagtcgttggatcactt ataactggatcggtagcttttgtcttctatctgaacttcctgcgaagcattattaggaagttagcaaacgaggcaagaat tcttagaagaatttacttggagtctgtagtgtaa |
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Protein
| Protein ID | pfu_aug2.0_1092.1_08162.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1092.1_08162.t1 MTQAQAPVLIQRNKDKNRTSKMAVRDVEDIEFGSDDADRYADKPSESTERDIPSDEAPWDVDRITAKLDSCLGENDYDGL RKNMEAMKSTKLSIAVMGPSCVGKSSFINNMLGLKEGDLGAATVGDGDTTQIRKAYSHPQIKQLEYYDLPGFGTPFFKMT DNYLREIKVESYDFFLIFYSGTISEGDVWIIQKLLDMKKMFALVRTRADEMKGRSKPLNQSIMEAKDRCETNLREFGIKV KVPTFIISNIDVNIGEMNNLFRFIKSSLPELKRMAITLHVQAKTDEIIAQKEEQLLDSAWVAALCMGVATGLPLPGVDIP INYVLLGDEIKSCLLSLGLSAEMFERIPEDVKIRMKTTSTIHKDGLKRYILLNITKIPTIISCALLQEAVEICLPVVGSL ITGSVAFVFYLNFLRSIIRKLANEARILRRIYLESVV |
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