Gene
| Gene Model ID | pfu_aug2.0_11.1_03386 |
|---|---|
| Locus | scaffold11.1 : 195291 ... 218476 : - |
| To GenomeBrowser | scaffold11.1:195291..218476 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_77.1_50601 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| structural maintenance of chromosomes protein 3 | GO:0000785 GO:0003682 GO:0005515 GO:0005524 GO:0006275 GO:0006281 GO:0007064 GO:0008280 GO:0030893 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03386.t1 | 1 | 1 | SMC_N | 2 | 1506 | 1.5e-37 | 128.9 | 1.3e-40 | 3.2e-37 | 127.8 |
| pfu_aug2.0_11.1_03386.t1 | 5 | 1 | TF_AP-2 | 193 | 297 | 0.0 | 232.8 | 2.2 | 5300.0 | -3.3 |
| pfu_aug2.0_11.1_03386.t1 | 2 | 1 | SMC_hinge | 264 | 302 | 4.1e-26 | 91.3 | 0.6 | 1500.0 | -0.9 |
| pfu_aug2.0_11.1_03386.t1 | 5 | 2 | TF_AP-2 | 541 | 728 | 0.0 | 232.8 | 0.0 | 0.0 | 232.8 |
| pfu_aug2.0_11.1_03386.t1 | 5 | 3 | TF_AP-2 | 767 | 812 | 0.0 | 232.8 | 2.2 | 5500.0 | -3.4 |
| pfu_aug2.0_11.1_03386.t1 | 2 | 2 | SMC_hinge | 856 | 968 | 4.1e-26 | 91.3 | 1.5e-28 | 3.6e-25 | 88.2 |
| pfu_aug2.0_11.1_03386.t1 | 5 | 4 | TF_AP-2 | 1048 | 1073 | 0.0 | 232.8 | 2.0 | 5000.0 | -3.2 |
| pfu_aug2.0_11.1_03386.t1 | 5 | 5 | TF_AP-2 | 1166 | 1216 | 0.0 | 232.8 | 1.0 | 2600.0 | -2.3 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03386.t1 | gi|524883270|ref|XP_005098268.1| | PREDICTED: structural maintenance of chromosomes protein 3-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_11.1_03386.t1 | gi|241636357|ref|XP_002410619.1| | SMC protein, putative [Ixodes scapularis] | 0.0 |
| pfu_aug2.0_11.1_03386.t1 | gi|675871140|ref|XP_009021130.1| | hypothetical protein HELRODRAFT_157320 [Helobdella robusta] | 0.0 |
| pfu_aug2.0_11.1_03386.t1 | gi|390362728|ref|XP_798572.3| | PREDICTED: structural maintenance of chromosomes protein 3 isoform X1 [Strongylocentrotus purpuratus] | 0.0 |
| pfu_aug2.0_11.1_03386.t1 | gi|391330336|ref|XP_003739619.1| | PREDICTED: structural maintenance of chromosomes protein 3-like [Metaseiulus occidentalis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03386.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03386.t1 atgattgagaaagatgaggtggttttacgaagagctattggttccaagaaagaccaatacttcttggataagaaaatggt tacaaaaggagatgttatgaacttactggagagtgcagggttttctaggagcaatccatactacattgttaaacagggaa agatcaatcagatggccacagctccagactcccaaagaatcaaacttctgagggaagtagctggtacaaaggtgtatgat gagagaaaagaggaaagtaaagtcattctcagggaaacagagggtaaaagagaaaagatcaatgatctgttaaaatacat agaagaaagactagctacattagaagatgaaaaagaagagctcaaggaatatcagaaatgggacaaaatgagacgatcac tggaatataccatccatgaccatgaacttagagacactcgtaaaaagttagatgagctccaagacaagcgagataacagt ggggctcagactcaggccatcagggacaagctgcaaacaacacaagacaaagtcaagctccaagacaagcgagataacag tggggctcagactcaggccatcagggacaagctgcaaacaacacaagacaaagtcaagtctgtaaataaagaactgagag atctgaagacaagaatgcagaccattatggaagagaaagaacaaataaatagtgagaatcaggatatgacaaagagacgt gccaagcttgaactactaataaaggatatccaggatgaacttgagggagataagagtgctaaaaaaaaatcagaggagga gcttaagaaggtaaatgataaaatccagaaaactcagggtcaactagaagccattataccccagtatgaagcccagagaa caaaggaagaaaactgtactcaacagctttccttggctgaacaaagacggaaggaattatatgccaaacaagggagaggg aatcagttcacatctagggatgacagagataactggatcaagaaagaactcaaatctcttaatagagctatccgtgataa agaagaacaggtatccatgcctgtttctttccacactccatccatgacttcctcagagttccagcctttgtatttccccc ctcctccccagcttcctgtagccagccagcctacagccatggagtactctcaccacccacactaccccatggattaccag tatatgcatggaggctaccctcagtacccacctcaccaccagccagagtacaatgccatacagcctgtagacagaatggc aatggagtacggcaagatgaacggcaatcaccaacaacacacagaaaacgagaactttgacagggtacatgagtataagg tggacaacagactgcagccacagagaccagaccatgtggctcctgtggttactacacccatggacttccaggaccaccac ttccagatgatgaatggaactgtagccccccaccaaccacagacagatatgggatataatgcaggatccagccctgaaag ctttgatagttttcaaatcacagttgagcagtctcttgatgtaccaaatgctgtagtaccacacaagggtaaccaggcca agagttctaaccctctacatgaagttttctgccttgtggatggaagacttgcattattgagtagcacttgtaaatacaag gtaactattgctgagatccaaaggcgactgtcacctccagaatgtctgaatgcgtccctgttaggcggtgttctcagacg tgccaagtcaaaggatggtgggaaaagattgagggagaaccttgacaaaataggattaagtctgccagctggaaggagga agggatctcagactacactgtttacttcccttgtcgagggtgagtctgtccgtcttgccagggactttgggctgctgtgt gagaacaacccacaggataagatggcacgacagaacatgatcctggccaccaaacagatcctcaacgagttcactaccct gttaaaccaggatcgttctcctatcggcaattccagccctccctctgtacttgatcctgagatacagcgccatctaaccc atttcagcatgatcacccatgggttcggagcacctgccattgttgctgcattaacagccgtccaatcataccttaacgag atgctgaaaggaatagaaaagtcaggtgatgtcaacaaaaccagcaaaggaaagaagaggctgagagaggacttgactaa tgagtctaagagagctgaacacctcggaactcaaatacaggatatcagtggcaagatagaccagaacaaagatatcattg agcagaataataaaaacttcaatgagatgaaaaaacaaaaagactcgcttcaaaacgaaagaaatgcattgtggagagaa gaaaataacctccaacagcagttacagactacaagagaagaactaagtaaaaaggaacagggtctcagatctatgattgg aaaggccacattgaatggtaaagacagtgtacataaagtactacagtcattcagagatcaggggaagttccaggatgtag tagatgggtatcatggcacactaatagaagtttttgattgtgagaaaactttttttacatgtgtagaggtcaccgctggt aacaggttatttcaccatattgtggattcagacaggacaggtactaaaatattaacggagatgaaccgtctgcgtctacc cggtgaggtcacttttatgccgctcaaccgactggacagcagggaaacacagtatccagataccaatgatgctataccaa tgataagcaagcttaagtatgacaataagtatgtacgtgccataaaccatgtgtttggtaaaaccctcatctgtcgtaac atggagacagccacacagatcgccagaactcagaacctggattgtatcacacttgatggtgaccaggtgagccgtagagg agccctgactggaggttactatgacacacggagatctcgacttgacctacagaaaggcaaggtagaactcagccagaaac tgtctgtacaggagagtgaatactctgaccataaacataaactggaagcactggaggggaagatcaacaaccttgtcagt gagatgcagaaaatggagaccagaaacagcaaaaataaagacacatttgataagatgcgagcagatcttagattaatgac ggaggagaagcaggctatagacaaatcccgatcacccaaggaaaagagtgtggccagtctacagtccagcctggaggcca tgcagagctcagcgtcctccctgaacgatgagctggggtcagatctgttatcacagctcagtgtggaggaccagaaagaa gtggatcacctcagtgaccaaatcaaagtactcacacaacagaacaaggaggctctcacagaaagaatcaggttagaggg agaaaagaacaaatttgaaaatttactacacaacaatctaatgaagaagagagacagaattgcgaacgagctgcaagaag ttacggcggaagatagacgtcaaaagctggaccaatatcagactgaacttgagtctgaggataacagggttacagagatg aaaggcactcttaaagatttggataaacaactagaaaaaatgaacaaggagcagaaagaattgcaatcaagtctagaaaa ctggagggcacaagaaaaggaatgtcaagacaagatcaatgatgatgccaaagatttggagaagatgactaataaacaga gtctcttactaaaaaagaaagatgaatgcatgaagaagataagagaactggggtcattaccaagtgatgcctttgaaaag tatcagaatctcagtttaaaacagttgtttaagaagttagaaaattgcaaccaagaattaaagaagtacagtcatgtcaa caagaaagctctagatcagtttgttaacttctctgatcaaaaggaaaaacttatcaaaagaaaagaggagttagatagtg cacatgagtccatcttagatctgatgaataaccttgatcacaagaagtatgaagctatacaactcaccttcaaacaggta tcaaagtatttcagtgagatcttcaagaatttggtaccacagggacatgccgtgttggtgatgaagaaaggcgacacgga ccagcaggacgatgaggattcccaggacgtaccactcgtggagcagttcacaggagtcggtattaaggtgtcgtttaccg gtaatcgagctgagatgagggacatgcagcagctgtcaggaggccagaaatccttggtggctctaacacttatatttgct atacagaagtgtgatcctgcacctttctacttgtttgatgagatagatcaggccttagactctcagcacagaaaagctgt agcagacatgattcatgagctagctggcaatgcacagttcatcaccactacgttcaggccagaattattagagcatgccg ataaattttatggagtcaagttcagaaataaggtcagtcatatagagtgtgtaagtaaggaagaggctgaggactttgtg gaggacgacacgacacatggctga |
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Protein
| Protein ID | pfu_aug2.0_11.1_03386.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03386.t1 MIEKDEVVLRRAIGSKKDQYFLDKKMVTKGDVMNLLESAGFSRSNPYYIVKQGKINQMATAPDSQRIKLLREVAGTKVYD ERKEESKVILRETEGKREKINDLLKYIEERLATLEDEKEELKEYQKWDKMRRSLEYTIHDHELRDTRKKLDELQDKRDNS GAQTQAIRDKLQTTQDKVKLQDKRDNSGAQTQAIRDKLQTTQDKVKSVNKELRDLKTRMQTIMEEKEQINSENQDMTKRR AKLELLIKDIQDELEGDKSAKKKSEEELKKVNDKIQKTQGQLEAIIPQYEAQRTKEENCTQQLSLAEQRRKELYAKQGRG NQFTSRDDRDNWIKKELKSLNRAIRDKEEQVSMPVSFHTPSMTSSEFQPLYFPPPPQLPVASQPTAMEYSHHPHYPMDYQ YMHGGYPQYPPHHQPEYNAIQPVDRMAMEYGKMNGNHQQHTENENFDRVHEYKVDNRLQPQRPDHVAPVVTTPMDFQDHH FQMMNGTVAPHQPQTDMGYNAGSSPESFDSFQITVEQSLDVPNAVVPHKGNQAKSSNPLHEVFCLVDGRLALLSSTCKYK VTIAEIQRRLSPPECLNASLLGGVLRRAKSKDGGKRLRENLDKIGLSLPAGRRKGSQTTLFTSLVEGESVRLARDFGLLC ENNPQDKMARQNMILATKQILNEFTTLLNQDRSPIGNSSPPSVLDPEIQRHLTHFSMITHGFGAPAIVAALTAVQSYLNE MLKGIEKSGDVNKTSKGKKRLREDLTNESKRAEHLGTQIQDISGKIDQNKDIIEQNNKNFNEMKKQKDSLQNERNALWRE ENNLQQQLQTTREELSKKEQGLRSMIGKATLNGKDSVHKVLQSFRDQGKFQDVVDGYHGTLIEVFDCEKTFFTCVEVTAG NRLFHHIVDSDRTGTKILTEMNRLRLPGEVTFMPLNRLDSRETQYPDTNDAIPMISKLKYDNKYVRAINHVFGKTLICRN METATQIARTQNLDCITLDGDQVSRRGALTGGYYDTRRSRLDLQKGKVELSQKLSVQESEYSDHKHKLEALEGKINNLVS EMQKMETRNSKNKDTFDKMRADLRLMTEEKQAIDKSRSPKEKSVASLQSSLEAMQSSASSLNDELGSDLLSQLSVEDQKE VDHLSDQIKVLTQQNKEALTERIRLEGEKNKFENLLHNNLMKKRDRIANELQEVTAEDRRQKLDQYQTELESEDNRVTEM KGTLKDLDKQLEKMNKEQKELQSSLENWRAQEKECQDKINDDAKDLEKMTNKQSLLLKKKDECMKKIRELGSLPSDAFEK YQNLSLKQLFKKLENCNQELKKYSHVNKKALDQFVNFSDQKEKLIKRKEELDSAHESILDLMNNLDHKKYEAIQLTFKQV SKYFSEIFKNLVPQGHAVLVMKKGDTDQQDDEDSQDVPLVEQFTGVGIKVSFTGNRAEMRDMQQLSGGQKSLVALTLIFA IQKCDPAPFYLFDEIDQALDSQHRKAVADMIHELAGNAQFITTTFRPELLEHADKFYGVKFRNKVSHIECVSKEEAEDFV EDDTTHG |
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