Gene
| Gene Model ID | pfu_aug2.0_11.1_03388 |
|---|---|
| Locus | scaffold11.1 : 230867 ... 232430 : + |
| To GenomeBrowser | scaffold11.1:230867..232430 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_1360.1_43998 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03388.t1 | 2 | 1 | zf-B_box | 13 | 48 | 9.5e-10 | 38.2 | 6.4e-14 | 9.5e-10 | 38.2 |
| pfu_aug2.0_11.1_03388.t1 | 2 | 2 | zf-B_box | 446 | 456 | 9.5e-10 | 38.2 | 0.088 | 1300.0 | -0.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03388.t1 | gi|62205380|gb|AAH93187.1| | Zgc:136688 protein [Danio rerio] | 2.0e-07 |
| pfu_aug2.0_11.1_03388.t1 | gi|319655773|ref|NP_001034808.2| | finTRIM family, member 67 [Danio rerio] | 6.0e-07 |
| pfu_aug2.0_11.1_03388.t1 | gi|89130587|gb|AAI14248.1| | Zgc:136688 [Danio rerio] | 2.0e-06 |
| pfu_aug2.0_11.1_03388.t1 | gi|49902960|gb|AAH76205.1| | Zgc:136688 [Danio rerio] | 3.0e-06 |
| pfu_aug2.0_11.1_03388.t1 | gi|260835725|ref|XP_002612858.1| | hypothetical protein BRAFLDRAFT_67192 [Branchiostoma floridae] | 8.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03388.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03388.t1 atggctactagttcttacaaggctcaatatgctctgaaattgtgcaaaaatcacgacaaaaaggagctcatagcgtattg taaaacttgtcaggaacagatatgttcatcgtgtatcaaggaggatcattctacacacgactgggaaatgattacagata tagttagggagaaaaaacgcagtctaccagaggactgtaaagtaatacgtgctaaactacttcctggtttgaaaaaggag ttacgccgttttgacagaaaaatcgaggaaaaagaagcttgctttaaacaaacgtcatctactttgcatatttcaaggca aagttacatcgacgaaagcaatcgattattcgataacagaattgacacatgtcgtcggaaatccgagtcggctatacaga tatacaaaggcaaacgtgaaggcctgaaacagaaagtagaaacccttgatacaatgacaacagctctaggcaaggatatt aatacattaccagatcatgacattctagacatggagaaggagatgagagatgaactggaaagggctctctctttcagcgc ggataaatctacatgtactacagtttttgtaccaggacagatgaatgttcaagctctagataaaatgataggtgaatttc atagtgtgtctatagaagaaatgaacgatatcgacaaaggctttaataccctagcttcaataaaagctttttctgaaaca aataccttggtcagattaattggggacagtcatccaaagcttattgatagagaaggagtggtattgaaatcaatgaaaac ttcttgtgcagatatcactatatcaaataatgggcattttgtccttactagtttgtccaatcaaagtgtgtcagttctga ctgaagtggagaaagcaattaggacatggtgtaccaaaccattacgtcctacgttcatcagtaagacagagaatgacaac atactggttacactggtggatgatggtgacaccttcaatctattaccgaccagccgccgtgttgtccaacgtatgtctct cacagggaaggtgctccacacttacgaattcagggaggatggtaagacaaggctgtttacattaccgaacaggacggcgg agaacaagaacacggacatatgtgttgtcaactggttcagtgaggacagcggagaagtggtggtactacataaagatgga cgtagaaagtatacgtataaaggtgaagggttgaagcacaaggagttctgtccaggagatgttgagtgtgatgataaatg tcgcattctgtttactgaacaatacagtagagcaatccacatgctgagttctgaagggatatatctatgtacactatgtc ggtatgaacagatacttccctttgtgatctctttgtacggtcaaaacctgtggtgtggattccatgaagggaaagtgaaa gttctaaaatacaaattgtga |
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Protein
| Protein ID | pfu_aug2.0_11.1_03388.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03388.t1 MATSSYKAQYALKLCKNHDKKELIAYCKTCQEQICSSCIKEDHSTHDWEMITDIVREKKRSLPEDCKVIRAKLLPGLKKE LRRFDRKIEEKEACFKQTSSTLHISRQSYIDESNRLFDNRIDTCRRKSESAIQIYKGKREGLKQKVETLDTMTTALGKDI NTLPDHDILDMEKEMRDELERALSFSADKSTCTTVFVPGQMNVQALDKMIGEFHSVSIEEMNDIDKGFNTLASIKAFSET NTLVRLIGDSHPKLIDREGVVLKSMKTSCADITISNNGHFVLTSLSNQSVSVLTEVEKAIRTWCTKPLRPTFISKTENDN ILVTLVDDGDTFNLLPTSRRVVQRMSLTGKVLHTYEFREDGKTRLFTLPNRTAENKNTDICVVNWFSEDSGEVVVLHKDG RRKYTYKGEGLKHKEFCPGDVECDDKCRILFTEQYSRAIHMLSSEGIYLCTLCRYEQILPFVISLYGQNLWCGFHEGKVK VLKYKL |
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