Gene
| Gene Model ID | pfu_aug2.0_11.1_03394 |
|---|---|
| Locus | scaffold11.1 : 365191 ... 385066 : - |
| To GenomeBrowser | scaffold11.1:365191..385066 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_24381.1_33429 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| methylcrotonoyl- carboxylase beta mitochondrial-like | GO:0008152 GO:0016874 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03394.t1 | 2 | 1 | Carboxyl_trans | 79 | 466 | 0.0 | 681.1 | 0.0 | 0.0 | 457.2 |
| pfu_aug2.0_11.1_03394.t1 | 2 | 2 | Carboxyl_trans | 477 | 675 | 0.0 | 681.1 | 0.0 | 0.0 | 221.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03394.t1 | gi|47086185|ref|NP_998092.1| | methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Danio rerio] | 0.0 |
| pfu_aug2.0_11.1_03394.t1 | gi|676493070|ref|XP_009066125.1| | hypothetical protein LOTGIDRAFT_197533 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_11.1_03394.t1 | gi|410929977|ref|XP_003978375.1| | PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial isoform X1 [Takifugu rubripes] | 0.0 |
| pfu_aug2.0_11.1_03394.t1 | gi|548398878|ref|XP_005738197.1| | PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial-like isoform X1 [Pundamilia nyererei] | 0.0 |
| pfu_aug2.0_11.1_03394.t1 | gi|498968787|ref|XP_004546992.1| | PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Maylandia zebra] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03394.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03394.t1 atgatccgcagttgtttcttacgagttttccgcgacaagataaagatttcatcacagaatgtaacgatcaagagatttta caatgcagatgcagttgttaccattggatcgatgccagagacagattctgcagattacaaagaaaactatgaacgcatgc aagtcttggtacaagatctgaggtctaaggttagcacagttttacaaggaggaggtgaaaaagccaggaatagacattta tcaagagggaaacttttacccagagacagaataaactctttactagatccagagtctccattcctagaactaagtcaact tgctgggtataagttatatggagaggaggaggtacctgcaggggggataatcactggtattggtagggtgtcaggggtag agtgtatgatagtagccaatgatcctacagtgaagggaggatcttactaccctatcacagtcaaaaaacatatcagagct caggaggtagctcagcagaaccatctaccatgtatatacttagttgactctggtggtgctaacttaccaagacaggcaga tgtgttcccagacagggatcactttggtagaatattctacaatcaagccaacatgtcagctaaaagaatacctcagatag cagtagttctgggtagctgtacagctggaggtgcctacgtcccggccatggctgatgagagtattatagtcagaaaacag ggtaccatcttcctaggaggacctcctcttgtgagggctgctacaggagaggaggtgtcagcagaagatttgggcggggc agatttacactgtggtaagtcaggcgtgacagactactatgcacaggatgacttacacgccctccatctagccagacagt gtataaagaatataaactataaaaaaaaaccacaggtaactatagaaccccctgaagaaccattatttccagccgatgaa ctttatgggattgtaggagataacttaaagaaaacatttgatgttagagaggtaatagctagaattgtagatggcagcaa atttgatgaatttaaaacactatatggggaaacattagtaacaggttttgctcgattatttggatatccagtcgggatta ttggcaataatggagtccttttctctgaatcagctctaaagggtacacattttatagaactatgctgtcaaaggaatata ccattaatatttctacaaaatataacaggatttatggtaggtagggatgcagaggcaggggggatagctaaacatggagc taaaatggtcactgctgtagcttgtgctaaagttccgaagttaactctgataataggaggatcatacggagcagggaatt atgggatgtgtggtagggcatacagtttatccaggataatacaggatgaaaatgattttgtttttcctttaggttttgct cgattatttggatatccagtcgggattattggcaataatggagtccttttctctgaatcagctctaaagggcacacattt tatagaactatgctgtcaaaggaatataccattaatatttctacaaaatataacaggatttatggttggtagggatgcag aggcaggggggatagctaaacatggagctaaaatggtcacagctgtagcttgtgctaaagttccgaagttaactctgata ataggaggatcatacggagcagggaattatgggatgtgtggtagggcatacagtcccaggtttttgtacatgtggcctaa tgcccgtgtatcagtgatgggaggggagcaggcagcaggtgtattagcacagattaccagagaacaaagggccagggagg gtaaaccttggacaccagaagaagaggaggcattaaaggcccctgttataaagaaatatgaaaaagaaggtcatccatac ttctccagtgcaaggttatgggatgatggtgtaatagatccagtggatacaagaactgtgttaggacttagtctgagtgc cgcattaaatgctcctcgtcaaaggacacgctttggagtctttagaatgtaa |
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Protein
| Protein ID | pfu_aug2.0_11.1_03394.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03394.t1 MIRSCFLRVFRDKIKISSQNVTIKRFYNADAVVTIGSMPETDSADYKENYERMQVLVQDLRSKVSTVLQGGGEKARNRHL SRGKLLPRDRINSLLDPESPFLELSQLAGYKLYGEEEVPAGGIITGIGRVSGVECMIVANDPTVKGGSYYPITVKKHIRA QEVAQQNHLPCIYLVDSGGANLPRQADVFPDRDHFGRIFYNQANMSAKRIPQIAVVLGSCTAGGAYVPAMADESIIVRKQ GTIFLGGPPLVRAATGEEVSAEDLGGADLHCGKSGVTDYYAQDDLHALHLARQCIKNINYKKKPQVTIEPPEEPLFPADE LYGIVGDNLKKTFDVREVIARIVDGSKFDEFKTLYGETLVTGFARLFGYPVGIIGNNGVLFSESALKGTHFIELCCQRNI PLIFLQNITGFMVGRDAEAGGIAKHGAKMVTAVACAKVPKLTLIIGGSYGAGNYGMCGRAYSLSRIIQDENDFVFPLGFA RLFGYPVGIIGNNGVLFSESALKGTHFIELCCQRNIPLIFLQNITGFMVGRDAEAGGIAKHGAKMVTAVACAKVPKLTLI IGGSYGAGNYGMCGRAYSPRFLYMWPNARVSVMGGEQAAGVLAQITREQRAREGKPWTPEEEEALKAPVIKKYEKEGHPY FSSARLWDDGVIDPVDTRTVLGLSLSAALNAPRQRTRFGVFRM |
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