Gene
| Gene Model ID | pfu_aug2.0_11.1_03409 |
|---|---|
| Locus | scaffold11.1 : 678874 ... 690141 : + |
| To GenomeBrowser | scaffold11.1:678874..690141 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_189684.1_50091 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03409.t2 | 1 | 1 | Ank_2 | 185 | 261 | 8.8e-12 | 45.2 | 1.2e-14 | 1.5e-11 | 44.5 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 1 | Ank_4 | 186 | 231 | 3.8e-08 | 33.6 | 9.0e-11 | 1.1e-07 | 32.1 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 1 | Ank_3 | 186 | 204 | 2.9e-07 | 30.0 | 0.05 | 62.0 | 4.2 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 1 | Ank | 187 | 209 | 3.4e-09 | 36.0 | 0.003 | 3.7 | 7.5 |
| pfu_aug2.0_11.1_03409.t2 | 1 | 1 | Ank_5 | 197 | 251 | 4.8e-07 | 29.8 | 7.7e-10 | 9.5e-07 | 28.8 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 2 | Ank | 211 | 238 | 3.4e-09 | 36.0 | 1.8e-09 | 2.3e-06 | 27.1 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 2 | Ank_3 | 211 | 236 | 2.9e-07 | 30.0 | 4.1e-08 | 5.0e-05 | 23.1 |
| pfu_aug2.0_11.1_03409.t2 | 2 | 2 | Ank_4 | 240 | 258 | 3.8e-08 | 33.6 | 6.4 | 7900.0 | -2.5 |
| pfu_aug2.0_11.1_03409.t2 | 1 | 1 | G-patch | 330 | 371 | 6.7e-11 | 41.7 | 1.1e-13 | 1.4e-10 | 40.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03409.t2 | gi|260808949|ref|XP_002599269.1| | hypothetical protein BRAFLDRAFT_64382 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_11.1_03409.t2 | gi|530591438|ref|XP_005289367.1| | PREDICTED: G patch domain and ankyrin repeat-containing protein 1 [Chrysemys picta bellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03409.t1 atgaatagatggagtatcggagcagattactccactttggtgacatttgtaaaggccaaggaaagcagagaagagattaa aaatgttgaattaaaaaatgttgacaggatcaagaaaaaagatgataaacagagtggagaagaagcaaggaaattctacg aagaaacactggctgtaaagactcaggaatttactgattcaaaattaaagcctcaagataaagtgccgaaaacgacaaaa gaaaaatgtaaacagcctcctgcaaaatgtaggagaaagatttcagcgaatctggtaaatgaatgtttgaaaattgcaca aaatggtgatgagaaaaaaatgaaggaattgatttctaaaggtgccaatgtaacacagtgtgataattttggatgggatg ctcttatgtgtgccgcttataatggacatataggagtagtgaaattgcttttgagaaatggagccaataaatttcaatgt gacactaagggaagaacagcggcagctttagcagggttgaaagggcacacgagtgtcaaaacttatatcgaaaatttcaa ttgtaatgaagacttgagagaacgtaatcgagaattgaaacgggagataactcatgatgagtcattttactgtcctgttt gtaaaagtaatttcaaagagtcctctaaaacggcacatgaagcttccaccgtgcatttattcaatatgaaactgaagcct aaagaagatccattcgtcattccgtcgagtaacgtaggatataagctgatgatgaaaagtggatgggatggacaaaaagg ccttggggccgaaagtcagggaaaacgtcatccaatcaaaactgtgttaaaaagagaccgagcttgcttagggtcggaag tacaatcatccaaaaaagcaagagtaactcactttggaccaaacgatcttggcgcagtgaaaaagagttccatgaatcta gataggaaaatgactgccaaaacactcagcaagaaagtacagaaattcagagaaaagaaagctaaaaattgggagaaaaa tttaagacagtacatgaatatggactaa |
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| Transcript ID | pfu_aug2.0_11.1_03409.t2 |
| Definition | - |
>pfu_aug2.0_11.1_03409.t2 atgaataggcagagtattggagcagattactccactttggtgacatttgtaaaggccaaggaaagcagagaagaaattaa aaatgttgaatcaaaaaatgttgacaggatcaagaaaaaagatgataaacagagtggagaggaagcaaggaaattctatg aagaaacactgactataaagactggggaatctactgattcaaaattaaagcataaaaataaagtgccgaaaacgacaaaa ggaaaatgtaaacagcctcctgcaaaatgtaggacaaagatttcagcgaatctggccaaggaaagcagagaagagattaa aaatgttgaattaaaaaatgttgacaggatcaagaaaaaagatgataaacagagtggagaagaagcaaggaaattctacg aagaaacactggctgtaaagactcaggaatttactgattcaaaattaaagcctcaagataaagtgccgaaaacgacaaaa gaaaaatgtaaacagcctcctgcaaaatgtaggagaaagatttcagcgaatctggtaaatgaatgtttgaaaattgcaca aaatggtgatgagaaaaaaatgaaggaattgatttctaaaggtgccaatgtaacacagtgtgataattttggatgggatg ctcttatgtgtgccgcttataatggacatataggagtagtgaaattgcttttgagaaatggagccaataaatttcaatgt gacactaagggaagaacagcggcagctttagcagggttgaaagggcacacgagtgtcaaaacttatatcgaaaatttcaa ttgtaatgaagacttgagagaacgtaatcgagaattgaaacgggagataactcatgatgagtcattttactgtcctgttt gtaaaagtaatttcaaagagtcctctaaaacggcacatgaagcttccaccgtgcatttattcaatatgaaactgaagcct aaagaagatccattcgtcattccgtcgagtaacgtaggatataagctgatgatgaaaagtggatgggatggacaaaaagg ccttggggccgaaagtcagggaaaacgtcatccaatcaaaactgtgttaaaaagagaccgagcttgcttagggtcggaag tacaatcatccaaaaaagcaagagtaactcactttggaccaaacgatcttggcgcagtgaaaaagagttccatgaatcta gataggaaaatgactgccaaaacactcagcaagaaagtacagaaattcagagaaaagaaagctaaaaattgggagaaaaa tttaagacagtacatgaatatggactaa |
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Protein
| Protein ID | pfu_aug2.0_11.1_03409.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03409.t1 MNRWSIGADYSTLVTFVKAKESREEIKNVELKNVDRIKKKDDKQSGEEARKFYEETLAVKTQEFTDSKLKPQDKVPKTTK EKCKQPPAKCRRKISANLVNECLKIAQNGDEKKMKELISKGANVTQCDNFGWDALMCAAYNGHIGVVKLLLRNGANKFQC DTKGRTAAALAGLKGHTSVKTYIENFNCNEDLRERNRELKREITHDESFYCPVCKSNFKESSKTAHEASTVHLFNMKLKP KEDPFVIPSSNVGYKLMMKSGWDGQKGLGAESQGKRHPIKTVLKRDRACLGSEVQSSKKARVTHFGPNDLGAVKKSSMNL DRKMTAKTLSKKVQKFREKKAKNWEKNLRQYMNMD |
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| Protein ID | pfu_aug2.0_11.1_03409.t2 |
| Definition | - |
>pfu_aug2.0_11.1_03409.t2 MNRQSIGADYSTLVTFVKAKESREEIKNVESKNVDRIKKKDDKQSGEEARKFYEETLTIKTGESTDSKLKHKNKVPKTTK GKCKQPPAKCRTKISANLAKESREEIKNVELKNVDRIKKKDDKQSGEEARKFYEETLAVKTQEFTDSKLKPQDKVPKTTK EKCKQPPAKCRRKISANLVNECLKIAQNGDEKKMKELISKGANVTQCDNFGWDALMCAAYNGHIGVVKLLLRNGANKFQC DTKGRTAAALAGLKGHTSVKTYIENFNCNEDLRERNRELKREITHDESFYCPVCKSNFKESSKTAHEASTVHLFNMKLKP KEDPFVIPSSNVGYKLMMKSGWDGQKGLGAESQGKRHPIKTVLKRDRACLGSEVQSSKKARVTHFGPNDLGAVKKSSMNL DRKMTAKTLSKKVQKFREKKAKNWEKNLRQYMNMD |
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