Gene
| Gene Model ID | pfu_aug2.0_11.1_03413 |
|---|---|
| Locus | scaffold11.1 : 711571 ... 731242 : + |
| To GenomeBrowser | scaffold11.1:711571..731242 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_12046.1_46458 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03413.t1 | 2 | 1 | Ribosomal_S18 | 19 | 29 | 1.6e-06 | 27.8 | 0.96 | 7100.0 | -3.1 |
| pfu_aug2.0_11.1_03413.t1 | 2 | 2 | Ribosomal_S18 | 161 | 200 | 1.6e-06 | 27.8 | 5.2e-10 | 3.9e-06 | 26.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03413.t1 | gi|524907735|ref|XP_005108982.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial-like isoform X2 [Aplysia californica] | 3.0e-35 |
| pfu_aug2.0_11.1_03413.t1 | gi|391338630|ref|XP_003743660.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial-like [Metaseiulus occidentalis] | 6.0e-34 |
| pfu_aug2.0_11.1_03413.t1 | gi|156544129|ref|XP_001605882.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial [Nasonia vitripennis] | 3.0e-31 |
| pfu_aug2.0_11.1_03413.t1 | gi|524907733|ref|XP_005108981.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial-like isoform X1 [Aplysia californica] | 6.0e-31 |
| pfu_aug2.0_11.1_03413.t1 | gi|665798552|ref|XP_008547155.1| | PREDICTED: 28S ribosomal protein S18b, mitochondrial [Microplitis demolitor] | 6.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03413.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03413.t1 atgtcgggattttgctcagaacagttcattcgaaccctgaattgttctagacagttaatgaatcatatctgtaaaagagg gaatataagcttgccattatggtcacatctacaggtcttatctacacaccaaagatgccaaactagacagtccattgtct catctcctttttccacgtcatcaaaactcaacaaaatattaagtgtggaaactttcgacgagtctaaaatagaacggccg aaatggtataaagaagaaggaagacatcgctggcaggggccgtataatgaagttagcccagaagtcagtcagcagtatct agaaagtgatgctttcaataatgtgtatggagatgaaccggtatggcttcattatagaagaaatttcaaaggtcatttac agccgtcagttcgagaaaaatgcacaagtaatggattgtacaaaactggtaacccctgtccagtatgtagggacaattat cttcgtatccattataagaatcctaagcttctattacaattctgcgagggtaacacgttgaatgtccgtgacaataacgt tacgggagtctgtaaaaaacaacagaaaaatatcatgaagcatctagcaatagctgtagacagaggtacaatagaggctc cgttgccgttcagaacgtatgactatgatcactacagaaagatggctggtttagactccacgaacacagatacaaaatca aggacaccagattcatga |
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Protein
| Protein ID | pfu_aug2.0_11.1_03413.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03413.t1 MSGFCSEQFIRTLNCSRQLMNHICKRGNISLPLWSHLQVLSTHQRCQTRQSIVSSPFSTSSKLNKILSVETFDESKIERP KWYKEEGRHRWQGPYNEVSPEVSQQYLESDAFNNVYGDEPVWLHYRRNFKGHLQPSVREKCTSNGLYKTGNPCPVCRDNY LRIHYKNPKLLLQFCEGNTLNVRDNNVTGVCKKQQKNIMKHLAIAVDRGTIEAPLPFRTYDYDHYRKMAGLDSTNTDTKS RTPDS |
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