Gene
| Gene Model ID | pfu_aug2.0_11.1_03418 |
|---|---|
| Locus | scaffold11.1 : 858681 ... 868643 : + |
| To GenomeBrowser | scaffold11.1:858681..868643 |
| Genes list of scaffold | scaffold11.1 |
| Synonym | pfu_aug1.0_4229.1_59468 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| cell differentiation protein rcd1 homolog | GO:0000289 GO:0000932 GO:0005634 GO:0005829 GO:0006355 GO:0006417 GO:0007548 GO:0016020 GO:0019221 GO:0019904 GO:0030014 GO:0031047 GO:0033147 GO:0042803 GO:2000327 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_11.1_03418.t1 | 2 | 1 | Rcd1 | 41 | 196 | 0.0 | 369.4 | 0.0 | 0.0 | 280.0 |
| pfu_aug2.0_11.1_03418.t1 | 2 | 2 | Rcd1 | 198 | 267 | 0.0 | 369.4 | 7.8e-30 | 1.2e-25 | 89.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_11.1_03418.t1 | gi|700411168|ref|XP_009959647.1| | PREDICTED: cell differentiation protein RCD1 homolog, partial [Leptosomus discolor] | 0.0 |
| pfu_aug2.0_11.1_03418.t1 | gi|697437340|ref|XP_009687994.1| | PREDICTED: cell differentiation protein RCD1 homolog, partial [Struthio camelus australis] | 0.0 |
| pfu_aug2.0_11.1_03418.t1 | gi|542152900|ref|XP_005485333.1| | PREDICTED: cell differentiation protein RCD1 homolog [Zonotrichia albicollis] | 0.0 |
| pfu_aug2.0_11.1_03418.t1 | gi|690444912|ref|XP_009323133.1| | PREDICTED: cell differentiation protein RCD1 homolog [Pygoscelis adeliae] | 0.0 |
| pfu_aug2.0_11.1_03418.t1 | gi|677982842|ref|XP_009073791.1| | PREDICTED: cell differentiation protein RCD1 homolog, partial [Acanthisitta chloris] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_11.1_03418.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03418.t1 atgaagactaaatacaagcaagctaggggaatgcttcaagcagggggaggtaaccctggtcagacaggccaacagccacc tgttgttttatcacaggtagaccgtgagaagatttatttatggatcatagaattaacgagcccagaaactagagagaatg ccctacaagaactcagcaaaaagcgtgaggtggtaccagacttagctcctatgctgtggcattcatttggaacagtggct gccctactccaggagatagtgaacatttacccggccattaacccaccccacctcacggctcaccaatcaaacagagtgtg taatgctctggcattgcttcagtgtgtggcctcacacccagaaacaagatcagcatttctacaagcgcacattccgttgt ttctgtacccatttcttcacactgtcagcaagactcgcccctttgagtatctgcgtctgaccagtttaggagtgattggg gcactagtcaagactgatgaacaagaagttataaacttccttctgacaacagaaatcatccctctgtgcctcagaataat ggagtccggtagtgaactctccaaaactggtaaaatggtgctccacctatctaaggaaccatccggtcgactcctaaagc atgtcgtacggtgctacctgagattatctgacaatccaagagctagagaagccctgcgtcaatgcttacctgatcagctt aaggacaacaccttctcaaattgtctaaaggacgacaactctaccaaaagatggctgctgcagttacagcagaacctaga ggccccagcaggagtacctgacccaaggagcatgcctctacatcagcagtga |
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Protein
| Protein ID | pfu_aug2.0_11.1_03418.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_11.1_03418.t1 MKTKYKQARGMLQAGGGNPGQTGQQPPVVLSQVDREKIYLWIIELTSPETRENALQELSKKREVVPDLAPMLWHSFGTVA ALLQEIVNIYPAINPPHLTAHQSNRVCNALALLQCVASHPETRSAFLQAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIG ALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTGKMVLHLSKEPSGRLLKHVVRCYLRLSDNPRAREALRQCLPDQL KDNTFSNCLKDDNSTKRWLLQLQQNLEAPAGVPDPRSMPLHQQ |
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