Gene
| Gene Model ID | pfu_aug2.0_110.1_00252 |
|---|---|
| Locus | scaffold110.1 : 81546 ... 89287 : + |
| To GenomeBrowser | scaffold110.1:81546..89287 |
| Genes list of scaffold | scaffold110.1 |
| Synonym | pfu_aug1.0_3917.1_37743 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| leucine-rich repeats and immunoglobulin-like domains protein 3 | GO:0044699 GO:0050896 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_110.1_00252.t1 | 5 | 1 | LRR_4 | 69 | 126 | 3.2e-16 | 58.5 | 7.0e-05 | 0.21 | 11.2 |
| pfu_aug2.0_110.1_00252.t1 | 4 | 1 | LRR_8 | 69 | 123 | 1.0e-14 | 54.0 | 6.2e-07 | 0.0018 | 17.9 |
| pfu_aug2.0_110.1_00252.t1 | 5 | 2 | LRR_4 | 137 | 175 | 3.2e-16 | 58.5 | 4.5e-08 | 0.00013 | 21.4 |
| pfu_aug2.0_110.1_00252.t1 | 4 | 2 | LRR_8 | 137 | 195 | 1.0e-14 | 54.0 | 1.1e-08 | 3.4e-05 | 23.5 |
| pfu_aug2.0_110.1_00252.t1 | 5 | 3 | LRR_4 | 183 | 227 | 3.2e-16 | 58.5 | 1.2e-10 | 3.6e-07 | 29.6 |
| pfu_aug2.0_110.1_00252.t1 | 4 | 3 | LRR_8 | 183 | 242 | 1.0e-14 | 54.0 | 2.1e-10 | 6.2e-07 | 29.0 |
| pfu_aug2.0_110.1_00252.t1 | 5 | 4 | LRR_4 | 208 | 242 | 3.2e-16 | 58.5 | 9.6e-08 | 0.00028 | 20.4 |
| pfu_aug2.0_110.1_00252.t1 | 4 | 4 | LRR_8 | 246 | 290 | 1.0e-14 | 54.0 | 0.0015 | 4.5 | 7.1 |
| pfu_aug2.0_110.1_00252.t1 | 5 | 5 | LRR_4 | 260 | 290 | 3.2e-16 | 58.5 | 0.001 | 3.0 | 7.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_110.1_00252.t1 | gi|676491153|ref|XP_009065503.1| | hypothetical protein LOTGIDRAFT_236409 [Lottia gigantea] | 2.0e-18 |
| pfu_aug2.0_110.1_00252.t1 | gi|126339204|ref|XP_001375215.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains 3 isoform X1 [Monodelphis domestica] | 6.0e-13 |
| pfu_aug2.0_110.1_00252.t1 | gi|617464388|ref|XP_007573147.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3 [Poecilia formosa] | 4.0e-12 |
| pfu_aug2.0_110.1_00252.t1 | gi|532030112|ref|XP_005358002.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3 [Microtus ochrogaster] | 6.0e-12 |
| pfu_aug2.0_110.1_00252.t1 | gi|597735048|ref|XP_007229810.1| | PREDICTED: leucine-rich repeats and immunoglobulin-like domains protein 3 [Astyanax mexicanus] | 7.0e-12 |
Transcript
| Transcript ID | pfu_aug2.0_110.1_00252.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00252.t1 atggcaactttattcgcattatgggtgtttctgtcgtatctagccaaatcatatacgtctcaatgcccggaatattttat tgacgaatgcacctgtaaaagtaaccaatcacaactgcagctcgtgtcatgtggtctgatccaggattctattccacgtt cactgatcacaaatgcctcagcggaagtgacgtatattgttcagctcaacctatcaaattcatctttgaagagtctgtca agtgatttcctgtcagggattgaagttataggagaggtcaaaatagatcataactttttccaagtgcttccgaaatttct cagccgtctcaaaagtatagaaaaagtagacctttctcataatgcaatttcaaatatgttgtcggatacagaaaggcgtt cgaagtttaatatgaaaacattgaatctagccaacaacgggatccagtttctgcgaagtatggaacttaattcatttccc cttctgaccactttagatttgtccagaaataattttgttacaatagatgtgaaaaacgtttatcttccatctcttatgtt tcttgatctgtcgcacaatcatattgaggagttcagaaaccttgaccttggattcggatcaaaattgaaaagccttaatc ttagtggtaactacataagcaatattcatataacagcattatcgtcactgaagcttctacgatttattgacctgtccgaa aaccagcacactttaaggacgtcttccttaaacctaccgcaacatatttcaagggtggatctacatagttgccatttgaa ctatatagatatatgtgggcttctccagcttcaagacctcagtttccttaatttgaatgacaatgatataatttgctcct gtgaagtcatatggttgtctcaacacataactctgaattctcagcataatgaagaaaatttgagtaagtttcacgtggaa cacgaaggtatgctagggatgtgctatgacgtagaacacaaaattcatattccattctcggacatgaaggtgaattgctc caaagaacaatacgacaaatacgttcgctcttgtcaaccacaagctcttcgggaagagtttcgcaaccttgacgagtacg tcagcaatatgaagttaagtatctcacttgacggagagaacatccggacggaatggacacctactacatctcctttgata tatggcttcattgtgcacgttcatgagatggaaaaagattctgcatttgactcatccattcttcatccttcagtaagttc attctccaacacagaacatgaagcgtgttgtggaacgtattcaatttgtctctgggttttactcaatgaaacttacatct atcacagaacatgcgaatcagtaatcgaggcaaataccaaatttgttattggtgttctggtaggcgttatgtttttaact ccatgcgttattgtcatgtcatatgttgctattaaggaccgccagcaagctagatgtaaaaaggtagcagccagattgga accaaagccatgcgagaaaccgcatatcccccataccccgtttggggcaacacccataatagatataatccaggaccatg ctagacaaattagatattgtaaatccgaactggatctgtgtggtagtgtggcctatcacctcaatgtaccgtctgaagaa tatggaagaactccggagttcaagcacagaccacttagcacagaagtagcttcggcatcttgtggaagatctccagaatg caaacacagagagannnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnttagacttgaagtaccctctttagagtacggtacatctccaagaataaaaccgaaagaaacaaaaac catttcacccacagacgttctacgaagaaccccggaaacaaagcacaaagacatacaaacagatgatacgatcaaattca tcgattacgacgaaggggaagcggccaagaagtcagcagaactggagggcgatggtggcattgacaatccagcatttttc tgtgttcgcctttga |
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Protein
| Protein ID | pfu_aug2.0_110.1_00252.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00252.t1 MATLFALWVFLSYLAKSYTSQCPEYFIDECTCKSNQSQLQLVSCGLIQDSIPRSLITNASAEVTYIVQLNLSNSSLKSLS SDFLSGIEVIGEVKIDHNFFQVLPKFLSRLKSIEKVDLSHNAISNMLSDTERRSKFNMKTLNLANNGIQFLRSMELNSFP LLTTLDLSRNNFVTIDVKNVYLPSLMFLDLSHNHIEEFRNLDLGFGSKLKSLNLSGNYISNIHITALSSLKLLRFIDLSE NQHTLRTSSLNLPQHISRVDLHSCHLNYIDICGLLQLQDLSFLNLNDNDIICSCEVIWLSQHITLNSQHNEENLSKFHVE HEGMLGMCYDVEHKIHIPFSDMKVNCSKEQYDKYVRSCQPQALREEFRNLDEYVSNMKLSISLDGENIRTEWTPTTSPLI YGFIVHVHEMEKDSAFDSSILHPSVSSFSNTEHEACCGTYSICLWVLLNETYIYHRTCESVIEANTKFVIGVLVGVMFLT PCVIVMSYVAIKDRQQARCKKVAARLEPKPCEKPHIPHTPFGATPIIDIIQDHARQIRYCKSELDLCGSVAYHLNVPSEE YGRTPEFKHRPLSTEVASASCGRSPECKHREXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXRLEVPSLEYGTSPRIKPKETKTISPTDVLRRTPETKHKDIQTDDTIKFIDYDEGEAAKKSAELEGDGGIDNPAFF CVRL |
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