Gene
| Gene Model ID | pfu_aug2.0_110.1_00262 |
|---|---|
| Locus | scaffold110.1 : 302774 ... 306051 : - |
| To GenomeBrowser | scaffold110.1:302774..306051 |
| Genes list of scaffold | scaffold110.1 |
| Synonym | pfu_aug1.0_26161.1_11755 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| mgc53213 protein | GO:0005488 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_110.1_00262.t1 | 4 | 1 | EF-hand_6 | 12 | 23 | 3.0e-16 | 57.7 | 4.9 | 5500.0 | -2.2 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 1 | EF-hand_7 | 31 | 42 | 3.4e-23 | 81.5 | 0.57 | 650.0 | 0.5 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 1 | EF-hand_4 | 31 | 48 | 9.8e-07 | 28.4 | 2.0 | 2200.0 | -1.7 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 1 | EF-hand_1 | 34 | 40 | 1.0e-17 | 61.9 | 6.8 | 7700.0 | -3.4 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 2 | EF-hand_6 | 35 | 47 | 3.0e-16 | 57.7 | 0.16 | 180.0 | 2.4 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 2 | EF-hand_4 | 52 | 102 | 9.8e-07 | 28.4 | 0.011 | 12.0 | 5.6 |
| pfu_aug2.0_110.1_00262.t1 | 2 | 1 | EF-hand_8 | 55 | 102 | 8.3e-15 | 54.1 | 2.0e-07 | 0.00023 | 20.7 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 2 | EF-hand_7 | 57 | 99 | 3.4e-23 | 81.5 | 1.8e-09 | 2.0e-06 | 27.8 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 2 | EF-hand_1 | 57 | 69 | 1.0e-17 | 61.9 | 2.3 | 2600.0 | -1.9 |
| pfu_aug2.0_110.1_00262.t1 | 1 | 1 | SPARC_Ca_bdg | 59 | 135 | 1.1e-06 | 28.6 | 1.2e-09 | 1.4e-06 | 28.3 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 3 | EF-hand_4 | 75 | 137 | 9.8e-07 | 28.4 | 2.3e-09 | 2.6e-06 | 27.1 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 3 | EF-hand_1 | 76 | 103 | 1.0e-17 | 61.9 | 2.8e-11 | 3.2e-08 | 32.2 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 3 | EF-hand_6 | 76 | 103 | 3.0e-16 | 57.7 | 1.0e-10 | 1.1e-07 | 31.0 |
| pfu_aug2.0_110.1_00262.t1 | 3 | 3 | EF-hand_7 | 77 | 137 | 3.4e-23 | 81.5 | 1.6e-20 | 1.8e-17 | 63.2 |
| pfu_aug2.0_110.1_00262.t1 | 2 | 1 | EF-hand_5 | 77 | 100 | 8.5e-17 | 59.6 | 7.0e-10 | 8.0e-07 | 28.1 |
| pfu_aug2.0_110.1_00262.t1 | 2 | 2 | EF-hand_8 | 102 | 139 | 8.3e-15 | 54.1 | 7.3e-13 | 8.3e-10 | 38.1 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 4 | EF-hand_1 | 113 | 137 | 1.0e-17 | 61.9 | 4.3e-12 | 4.9e-09 | 34.8 |
| pfu_aug2.0_110.1_00262.t1 | 2 | 2 | EF-hand_5 | 114 | 137 | 8.5e-17 | 59.6 | 2.2e-10 | 2.5e-07 | 29.7 |
| pfu_aug2.0_110.1_00262.t1 | 4 | 4 | EF-hand_6 | 114 | 137 | 3.0e-16 | 57.7 | 3.8e-08 | 4.3e-05 | 23.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_110.1_00262.t1 | gi|27371207|gb|AAH41530.1| | MGC53213 protein [Xenopus laevis] | 2.0e-16 |
| pfu_aug2.0_110.1_00262.t1 | gi|147901556|ref|NP_001079398.1| | fast skeletal troponin C beta [Xenopus laevis] | 2.0e-16 |
| pfu_aug2.0_110.1_00262.t1 | gi|1945533|dbj|BAA19734.1| | fast skeletal troponin C alpha [Xenopus laevis] | 3.0e-16 |
| pfu_aug2.0_110.1_00262.t1 | gi|45360569|ref|NP_988957.1| | troponin C, skeletal muscle [Xenopus (Silurana) tropicalis] | 3.0e-16 |
| pfu_aug2.0_110.1_00262.t1 | gi|657566274|ref|XP_008286472.1| | PREDICTED: troponin C, skeletal muscle [Stegastes partitus] | 5.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_110.1_00262.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00262.t1 atggcaaacatagaagcagaaatcacatccaatttcaatgtctacgcaaatggtggccgtcttgagattgggaaacttca aagggcgttatgtccgatatttggatatgtagattcagaccgcgttcaacagatattgaaggaaaattggcctgatgtgc aagatgttttgaccatggaacagttcaagacgctagttcacaagatgtcaacagacaaaacaactgagctacgagaaacc tttgaaatgtttgacaaaaatcatgatggctatatcactcgaaaagaatactctcaggttttacgcaaaataggccaaga tgtcgacgatgagacggtggaacagatatttaaagaggcagaccttaacaatgatggaaagatagattttaacgaattta tgaaaatgatgctggatgccaagtga |
|
Protein
| Protein ID | pfu_aug2.0_110.1_00262.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00262.t1 MANIEAEITSNFNVYANGGRLEIGKLQRALCPIFGYVDSDRVQQILKENWPDVQDVLTMEQFKTLVHKMSTDKTTELRET FEMFDKNHDGYITRKEYSQVLRKIGQDVDDETVEQIFKEADLNNDGKIDFNEFMKMMLDAK |
|