Gene
| Gene Model ID | pfu_aug2.0_110.1_00265 |
|---|---|
| Locus | scaffold110.1 : 431682 ... 455999 : + |
| To GenomeBrowser | scaffold110.1:431682..455999 |
| Genes list of scaffold | scaffold110.1 |
| Synonym | pfu_aug1.0_10347.1_39036 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| receptor-type tyrosine-protein phosphatase f- partial | GO:0005515 GO:0007165 GO:0010975 GO:0016787 GO:0043168 GO:0048523 GO:0048583 GO:0097458 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_110.1_00265.t1 | 2 | 1 | Y_phosphatase | 307 | 530 | 0.0 | 297.3 | 0.0 | 0.0 | 232.0 |
| pfu_aug2.0_110.1_00265.t1 | 2 | 1 | DSPc | 425 | 510 | 5.3e-07 | 29.2 | 7.6e-08 | 0.00028 | 20.4 |
| pfu_aug2.0_110.1_00265.t1 | 2 | 2 | Y_phosphatase | 589 | 875 | 0.0 | 297.3 | 2.5e-22 | 9.2e-19 | 67.7 |
| pfu_aug2.0_110.1_00265.t1 | 2 | 2 | DSPc | 761 | 865 | 5.3e-07 | 29.2 | 0.0021 | 7.8 | 6.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_110.1_00265.t1 | gi|589967348|ref|XP_006996200.1| | PREDICTED: receptor-type tyrosine-protein phosphatase F-like, partial [Peromyscus maniculatus bairdii] | 0.0 |
| pfu_aug2.0_110.1_00265.t1 | gi|723134727|ref|XP_010283950.1| | PREDICTED: receptor-type tyrosine-protein phosphatase F, partial [Phaethon lepturus] | 0.0 |
| pfu_aug2.0_110.1_00265.t1 | gi|993006|emb|CAA86070.1| | protein tyrosine phosphatase [Mus musculus] | 0.0 |
| pfu_aug2.0_110.1_00265.t1 | gi|514704325|ref|XP_005009294.1| | PREDICTED: receptor-type tyrosine-protein phosphatase F-like [Anas platyrhynchos] | 0.0 |
| pfu_aug2.0_110.1_00265.t1 | gi|585176466|ref|XP_006740003.1| | PREDICTED: receptor-type tyrosine-protein phosphatase F [Leptonychotes weddellii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_110.1_00265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00265.t1 atgaggagcaccataaggacgcataaggtacataataatatatggggtgatatctgtcataaagacgagcatccacctgg agactacaaagatttcaaccttctacaaaatatatcttgttttactgatgccagatatgtaagcattgtacagtactatg tcagtgaggaaccccaaatttacacaccaatcatggcggtgtgcgagctacaaatttttggttgtcaagtcggtaggtac ggagtaaactgcgagaaaacatgttcaaatgactgcttgactggtaaatgcgatcctgatttgggatgtttagaatgcga taatggattgaaaggaccggactgtttaactgaatgccctgcttacacatatggtgactggtgtggagaagtatgtggta aatgtattgacaacgctgtttgcgacgaaggaaatggacattgtccgaattctttgtgtaagagaggatatagaggatct ctttgtaaagaagaatgtgactttggattctacggatataattgcaatgaaacatgtggtaaatgtttacacaatcagtc atgcgacagtgaaattggacattgcccttcatgtgaagaaggctttatatacccgctttgtaaagaacaatgcccaaatg gtacatatggttatcactgcaatgaaacttgtggatattgcatgggtggagaacattgccactggaaaaatggaatgtgt ccgaatggctgtgacttaggatactcaggacaaacttgcaagacagaatgtacagataataaattcggattcaattgtgc agagaattgtagtttctgtcgggataacgagcagtgtgatatattctatggaaattgttcagcgtgccagattggataca caggaaatttatgcaacatgaggaagcttgaacaagacgatgatactcgtgtccgtttagaaacaggaaacgaagaagag tcagactacatcaatgcaaactacatttcgaatcttgatggacgaaaagcttatatcgcatgtcaaggaccaaaggatca cacaatcatcgacatgtggaggatgatatggcaagaaaagatatcacaaatcgttatggtaaccaatataaaagagcaaa ataagatgaaatgctctaaatactggcctgatgtcaattcgtctgattcgcatgggatgttcaatatttcaacagttgac gaaagaatatattcaaattttacaattcgaaatctgtcagtgtaccattcacagagaaaagagacacggaatttaacaca ttttcaatatacaacatggccagaccatggagtgccagaggctgataatctggttgcattccacaatcgcataaaacgtt ctcagtcactgactaatacaaaaaatacaaaagaacctcctttgttagtccattgcagtgctggaatcggacggacagga acgttcatagctttagacgccctttcggaatattgcagacatgcaaagacaataaatgttttcaaatacattaagaagat gagagaagaggaaaggatgaatatggttcagacagcggatcagtatgcagcaattcatagacttcttcatgagtcacttc gaatgaaattctatcctattgaaagggaaacattagctgaagaggtcagcaaaatgtgtagcaccagtgtacccaccaat caaagcaaactacgggcacagataatggagctgtcaacgttgaaaccagtctatacagaaaaagacttttcaggaggcat gcagaatcaacacctgaacgtcgaaccaaagattcttccagtcgataagtacagggtttacctgagctcatacgtcaaag gtaggagtgactacatcaatgcagtgacaataccaggtgtgatatccaagtgtgacagtcagacggacagacagacggac aaagtgatccctaagtgtcgctatgcttcacgggcgacacaaaaaggaaggcacctcaaacagaactggctgcaatttcc gcagcaaaacaagaaaccacccagtagtgctggtagcgtagtgacgcaaactgacgagaagggtatcattgtcacaaatt ttccatcgtccgaaaacactgttgatctcctaagactgctggtagatcatggaacgatcctcgtttcccttcaaatggca aacagttctgaaaaggaatgggtacaaagtatcaccttgagtcctgatcttgatccatatgcagttgaaatgtgtaatta ttcagaatcaccagaatcaaacagttttaacaggtctaccttgaatgtaacacataagaaggattcgacttccgatacat ttccagtttttgagactacattttggccaacgaaatacaccgacaacatggatttgaatgtaatcactgatctggtgctc gctgtgaaggaagtcaaaaacacaacggaaaaagaaggaaaaacagttgtcgttagcaaggacggtgtttccggatgtga catattctgcgcagtctacaacgcaatggaacagcttgaccttgataatgaaatagatatgtttaacatcatcagaaaaa tacagatcagacgacctcagtttgtaccaaccgtggacgaatacacactgtgtttgaaatcagcagcaaaaatcccgcct gcaagcgaaaacatctacgtcaacctataa |
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Protein
| Protein ID | pfu_aug2.0_110.1_00265.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_110.1_00265.t1 MRSTIRTHKVHNNIWGDICHKDEHPPGDYKDFNLLQNISCFTDARYVSIVQYYVSEEPQIYTPIMAVCELQIFGCQVGRY GVNCEKTCSNDCLTGKCDPDLGCLECDNGLKGPDCLTECPAYTYGDWCGEVCGKCIDNAVCDEGNGHCPNSLCKRGYRGS LCKEECDFGFYGYNCNETCGKCLHNQSCDSEIGHCPSCEEGFIYPLCKEQCPNGTYGYHCNETCGYCMGGEHCHWKNGMC PNGCDLGYSGQTCKTECTDNKFGFNCAENCSFCRDNEQCDIFYGNCSACQIGYTGNLCNMRKLEQDDDTRVRLETGNEEE SDYINANYISNLDGRKAYIACQGPKDHTIIDMWRMIWQEKISQIVMVTNIKEQNKMKCSKYWPDVNSSDSHGMFNISTVD ERIYSNFTIRNLSVYHSQRKETRNLTHFQYTTWPDHGVPEADNLVAFHNRIKRSQSLTNTKNTKEPPLLVHCSAGIGRTG TFIALDALSEYCRHAKTINVFKYIKKMREEERMNMVQTADQYAAIHRLLHESLRMKFYPIERETLAEEVSKMCSTSVPTN QSKLRAQIMELSTLKPVYTEKDFSGGMQNQHLNVEPKILPVDKYRVYLSSYVKGRSDYINAVTIPGVISKCDSQTDRQTD KVIPKCRYASRATQKGRHLKQNWLQFPQQNKKPPSSAGSVVTQTDEKGIIVTNFPSSENTVDLLRLLVDHGTILVSLQMA NSSEKEWVQSITLSPDLDPYAVEMCNYSESPESNSFNRSTLNVTHKKDSTSDTFPVFETTFWPTKYTDNMDLNVITDLVL AVKEVKNTTEKEGKTVVVSKDGVSGCDIFCAVYNAMEQLDLDNEIDMFNIIRKIQIRRPQFVPTVDEYTLCLKSAAKIPP ASENIYVNL |
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