Gene
| Gene Model ID | pfu_aug2.0_1103.1_11430 |
|---|---|
| Locus | scaffold1103.1 : 9738 ... 19605 : - |
| To GenomeBrowser | scaffold1103.1:9738..19605 |
| Genes list of scaffold | scaffold1103.1 |
| Synonym | pfu_aug1.0_3399.1_66669 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| splicing factor u2af 50 kda subunit | GO:0000166 GO:0000245 GO:0000381 GO:0003729 GO:0005654 GO:0005686 GO:0007052 GO:0008187 GO:0019013 GO:0022008 GO:0046833 GO:0046982 GO:0071011 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1103.1_11430.t1 | 3 | 1 | RRM_1 | 77 | 150 | 3.9e-32 | 109.6 | 3.1e-09 | 9.1e-06 | 25.2 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 1 | RRM_6 | 77 | 151 | 2.8e-24 | 84.8 | 5.3e-14 | 1.6e-10 | 40.8 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 1 | RRM_5 | 112 | 152 | 2.8e-16 | 59.1 | 1.3e-07 | 0.00038 | 20.2 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 2 | RRM_1 | 187 | 256 | 3.9e-32 | 109.6 | 3.0e-18 | 8.9e-15 | 54.0 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 2 | RRM_6 | 187 | 255 | 2.8e-24 | 84.8 | 8.0e-10 | 2.4e-06 | 27.4 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 2 | RRM_5 | 202 | 259 | 2.8e-16 | 59.1 | 6.0e-05 | 0.18 | 11.6 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 3 | RRM_1 | 314 | 373 | 3.9e-32 | 109.6 | 1.8e-08 | 5.3e-05 | 22.7 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 3 | RRM_6 | 314 | 370 | 2.8e-24 | 84.8 | 3.0e-05 | 0.088 | 12.8 |
| pfu_aug2.0_1103.1_11430.t1 | 3 | 3 | RRM_5 | 317 | 371 | 2.8e-16 | 59.1 | 1.1e-08 | 3.4e-05 | 23.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1103.1_11430.t1 | gi|676463799|ref|XP_009056713.1| | hypothetical protein LOTGIDRAFT_190527 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1103.1_11430.t1 | gi|347968827|ref|XP_311994.4| | AGAP002908-PA [Anopheles gambiae str. PEST] | 0.0 |
| pfu_aug2.0_1103.1_11430.t1 | gi|386764550|ref|NP_001245709.1| | U2 small nuclear riboprotein auxiliary factor 50, isoform C [Drosophila melanogaster] | 0.0 |
| pfu_aug2.0_1103.1_11430.t1 | gi|642931995|ref|XP_008196812.1| | PREDICTED: splicing factor U2AF 50 kDa subunit [Tribolium castaneum] | 0.0 |
| pfu_aug2.0_1103.1_11430.t1 | gi|498981388|ref|XP_004529595.1| | PREDICTED: splicing factor U2AF 50 kDa subunit isoform X2 [Ceratitis capitata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1103.1_11430.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11430.t1 atgacaaagacagaagtgcaagtagtaggaaaagatcaaggtcaaggtcaaaaggaagaagatcaagaagtcgagacagg aagaggtcaaggtccagggatagagacagaaaaaggagatccagaaggagcaggtcagattccacaggctatcacagtac ccaatgtggcactcacaaacacaacagtgccgtttgccggcagtgccattagccggcaagctcgacggctctatgttggc aacataccctttggagttacagaggaggccatgatggacttctttaatcatcaaatgaagttaactgggttagcccaagc cgagggaaatcctgtaatagcagtccaaattaatctggacaaaaactttgctttccttgagtttcgatctgttgatgaaa ccactcaagctatggcttttgatggtattaatttccaaggtcagtcactgaagataaggcgtccacgtgattaccaacct ttaccaggcatggcagaaactccctccgtcaatgtaccaggagtggtgtccactgtcgtacaagactcaatacataaaat ctttatcggtggactacccaactaccttaatgaagatcaggtaaaagaactactgacttcatttgggcctctgaaggcat ttaatctggtcaaggacagcgctacgggtctatcaaagggctacgctttctgtgaatatgtagaccctagtgttacagat cagggctgtgctggtctgaatggtatgcagctgggagataagaagctgattgtacaaagagccagtgtaggagcaaaaaa catgcaagtgccggtacagctacagatcccaggactgaacctgaaccagggggcgggaccacccacagaagttctctgtc tgatgaacatggtagtcccagaagaactagaggatgaagaggaatatgaagacatcctagaagacgtgaaggaggagtgt ggtaaatatggagttgtacgtagtatagaaataccccgacccataaaaggggtggaagtaccaggatgtggaaagatatt tgtggagttcaactctatcatagactgtcagaaggcccagcaggcactgacaggaagaaaattctccagccgtgtagtcg tcacatcatattacgaccctgataaatatcacagaagagaattctaa |
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Protein
| Protein ID | pfu_aug2.0_1103.1_11430.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11430.t1 MTKTEVQVVGKDQGQGQKEEDQEVETGRGQGPGIETEKGDPEGAGQIPQAITVPNVALTNTTVPFAGSAISRQARRLYVG NIPFGVTEEAMMDFFNHQMKLTGLAQAEGNPVIAVQINLDKNFAFLEFRSVDETTQAMAFDGINFQGQSLKIRRPRDYQP LPGMAETPSVNVPGVVSTVVQDSIHKIFIGGLPNYLNEDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDPSVTD QGCAGLNGMQLGDKKLIVQRASVGAKNMQVPVQLQIPGLNLNQGAGPPTEVLCLMNMVVPEELEDEEEYEDILEDVKEEC GKYGVVRSIEIPRPIKGVEVPGCGKIFVEFNSIIDCQKAQQALTGRKFSSRVVVTSYYDPDKYHRREF |
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