Gene
| Gene Model ID | pfu_aug2.0_1103.1_11431 |
|---|---|
| Locus | scaffold1103.1 : 28656 ... 40274 : + |
| To GenomeBrowser | scaffold1103.1:28656..40274 |
| Genes list of scaffold | scaffold1103.1 |
| Synonym | pfu_aug1.0_3399.1_66670 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 40s ribosomal protein sa | GO:0000028 GO:0000447 GO:0000461 GO:0003735 GO:0006407 GO:0006412 GO:0022627 GO:0030686 GO:0043236 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1103.1_11431.t1 | 2 | 1 | Ribosomal_S2 | 39 | 132 | 1.69557e-43 | 148.3 | 3.3e-23 | 4.9e-19 | 68.3 |
| pfu_aug2.0_1103.1_11431.t1 | 2 | 2 | Ribosomal_S2 | 137 | 204 | 1.69557e-43 | 148.3 | 2.6e-26 | 3.8e-22 | 78.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1103.1_11431.t1 | gi|327278514|ref|XP_003224007.1| | PREDICTED: 40S ribosomal protein SA [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_1103.1_11431.t1 | gi|602653769|ref|XP_007432737.1| | PREDICTED: 40S ribosomal protein SA-like [Python bivittatus] | 0.0 |
| pfu_aug2.0_1103.1_11431.t1 | gi|147902645|ref|NP_001080730.1| | ribosomal protein SA [Xenopus laevis] | 0.0 |
| pfu_aug2.0_1103.1_11431.t1 | gi|308081909|ref|NP_001007824.1| | 40S ribosomal protein SA [Gallus gallus] | 0.0 |
| pfu_aug2.0_1103.1_11431.t1 | gi|514734162|ref|XP_005016997.1| | PREDICTED: 40S ribosomal protein SA isoform X2 [Anas platyrhynchos] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1103.1_11431.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11431.t1 atgacagttttacgagaaaactacactggagcgatcgccgtaactcagatcgctgctaagatgtccggaggactagacgt gttagcgttgaaagaggaagatattaccaagtttttggcatgtagtacacacttgggtgccaccaatgtggactttcaga tggagcagtatgtttacaaacgtaaaccagacggtgtatacatcatcaatctgaggaggacgtgggagaagctattactg gcagcccgtgctattgcagccatagagaacccagctgatgtgtgcgtcatctcagccagaccgtatggacaacgtgctgt actcaagtttgcttctgctactggtgccacacccattgctggaaggttcacccctggaactttcaccaaccagatccagg ctgctttccgtgagcctcgtctgttggttgtgaccgacccacgtatagatcatcaacctgtaactgaggcatcatacgtc aacatcccagttattgccctctgtaacaccgactccccactcagatatgtggatgtagccattccatgcaacaacaagtc tgtgcactctgttggtttgatgtggtggttgttggctcgtgaagtgcttcgcctgnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnn nnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnnncgtggaaccatcagccgtgaccatccatgggaggtcat ggttgatctgtacttctacagggatccagaggaagctgagaaggaggaacagactgtagtggagaaaccagctgtcaaat ctgatgaggtacaggatcaatgggccaccactgatatagccatccagccaccacaacaggaggtcagcgattgggcagca gaatccatccctgtagccccgcctggtcagccattcatgcctcctccagccaaggactggtcagcaagtacaacagagga ctggtcagctgccgcctctggcccagctcccacaggaggtgctcctgaatggggaggtggcacctcagaaaactggggct ga |
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Protein
| Protein ID | pfu_aug2.0_1103.1_11431.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1103.1_11431.t1 MTVLRENYTGAIAVTQIAAKMSGGLDVLALKEEDITKFLACSTHLGATNVDFQMEQYVYKRKPDGVYIINLRRTWEKLLL AARAIAAIENPADVCVISARPYGQRAVLKFASATGATPIAGRFTPGTFTNQIQAAFREPRLLVVTDPRIDHQPVTEASYV NIPVIALCNTDSPLRYVDVAIPCNNKSVHSVGLMWWLLAREVLRLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXRGTISRDHPWEVMVDLYFYRDPEEAEKEEQTVVEKPAVKSDEVQDQWATTDIAIQPPQQEVSDWAA ESIPVAPPGQPFMPPPAKDWSASTTEDWSAAASGPAPTGGAPEWGGGTSENWG |
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