Gene
| Gene Model ID | pfu_aug2.0_1108.1_28060 |
|---|---|
| Locus | scaffold1108.1 : 48958 ... 86885 : - |
| To GenomeBrowser | scaffold1108.1:48958..86885 |
| Genes list of scaffold | scaffold1108.1 |
| Synonym | pfu_aug1.0_43215.1_55893 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | zf-RING_6 | 81 | 141 | 6.6e-06 | 25.8 | 7.9e-09 | 7.3e-06 | 25.6 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | zf-C3HC4_3 | 85 | 132 | 4.0e-06 | 26.4 | 8.4e-09 | 7.8e-06 | 25.4 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | zf-RING_2 | 86 | 127 | 8.6e-07 | 28.6 | 9.3e-10 | 8.6e-07 | 28.6 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | zf-C3HC4 | 87 | 126 | 4.5e-09 | 35.8 | 4.9e-12 | 4.5e-09 | 35.8 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | zf-C3HC4_4 | 87 | 126 | 2.9e-08 | 33.4 | 3.2e-11 | 2.9e-08 | 33.4 |
| pfu_aug2.0_1108.1_28060.t1 | 1 | 1 | zf-C3HC4_2 | 87 | 126 | 3.4e-06 | 26.9 | 3.7e-09 | 3.4e-06 | 26.9 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | zf-C3HC4 | 195 | 207 | 4.5e-09 | 35.8 | 0.22 | 210.0 | 1.6 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | zf-RING_2 | 195 | 208 | 8.6e-07 | 28.6 | 1.6 | 1500.0 | -1.0 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | zf-C3HC4_4 | 200 | 207 | 2.9e-08 | 33.4 | 7.4 | 6900.0 | -3.0 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | zf-C3HC4_3 | 200 | 213 | 4.0e-06 | 26.4 | 0.043 | 40.0 | 3.9 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | zf-RING_6 | 203 | 222 | 6.6e-06 | 25.8 | 1.3 | 1200.0 | -0.6 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 1 | BRCT | 2283 | 2344 | 1.7e-14 | 53.7 | 3.2e-10 | 2.9e-07 | 30.5 |
| pfu_aug2.0_1108.1_28060.t1 | 2 | 2 | BRCT | 2381 | 2445 | 1.7e-14 | 53.7 | 7.3e-07 | 0.00068 | 19.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1108.1_28060.t1 | gi|585690463|ref|XP_006821068.1| | PREDICTED: breast cancer type 1 susceptibility protein homolog [Saccoglossus kowalevskii] | 6.0e-39 |
| pfu_aug2.0_1108.1_28060.t1 | gi|676449596|ref|XP_009052105.1| | hypothetical protein LOTGIDRAFT_174527 [Lottia gigantea] | 2.0e-37 |
| pfu_aug2.0_1108.1_28060.t1 | gi|390350599|ref|XP_001188292.2| | 2.0e-37 | |
| pfu_aug2.0_1108.1_28060.t1 | gi|119655545|gb|ABL86143.1| | BRCA1 [Strongylocentrotus purpuratus] | 3.0e-37 |
| pfu_aug2.0_1108.1_28060.t1 | gi|260809375|ref|XP_002599481.1| | hypothetical protein BRAFLDRAFT_122749 [Branchiostoma floridae] | 1.0e-35 |
Transcript
| Transcript ID | pfu_aug2.0_1108.1_28060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1108.1_28060.t1 atgacgatgtcgacgacgacgaaggcaatgatggtgatgatgatgatttttgatgatgatgatgatgatgatgatgatga tgatgatggtgatgatggtggtagtggttgcggtgatgatgatgatgatgatgatgatgatgatgatgatgatgatgatg atgatgatgatggtggtagtgaagacaggaaaatgtcggaaaacaaagcggataaaaaagtccacaatttgattgggttg atgcagaagaatttggagtgttcaatctgccttgatttactgaacaatcctgtatctacaaaatgtgatcatcctttctg caatttctgtataacagaatttttgaagaccaacagatccgtaccatgtccgttatgtaaaactccagtgactaagagga gtctgagagagaggcctcagctgtctaagattgtagacgatgtcagacaacttgtcgatgcattccagaaagatacaggc aatttgttttctccatcacgatgccctcaatcaatggagtttgcactcggctccccagatcagctcctgacaaaggaaca aagagggacgaaacgcaaaaaatttttgaagaccaacagatccgtcccatgtccgttatgtaaaactccagtgactaaga ggagtctgagagagaggccccagctgtctaagattgtagacgatgtcagacaacttgtcgatgcattccagaaagatacc ggcaatttgttttcaccatcacgatgccctcaatcaatggagtttgcactcggctccccagatcagctcctgacaaagga acaaagagggacgaaacgcaaaagtaattctctggaaagaaagaatgtcaggaatgttagacaatccaaaaggagaaggt ctgatgtatgtgaggcaggtgacgcctcgtctgagagcaaggcagaaacagactctggtaataatacactgtatggagac ggagacgcatctaggccgacacttaaccatgtgaacggaaatattgatgcttgtaggtcattggttcaacatgttctagg gaatggtgaagcatcagtaattggcaggcgtgcagacaatcagaaagccacgacaagtgaaacagctgaaaaaatagtca attcaaaaacatcaaaaagaaataagaaacataatgctactgaagagcttctgaactacattgagaacggctcctgtgga gcaattgatgagtttgaaccgtctgctgatgaagagggaaaatcaaatgtggaagtaacagaaaagggtacatgtagtaa tgtgagtgaagcagagaggaaaaaggtgccagatgcctcacctagaaaagctgataatttgtttgaacgtttgtctggtt tgagtgaggacggttttaatgaagattgtcgattggagagcggttttagccttgaggatattattggtgataggagcatt agaagagaagggaatgttcgaaagagggatgctcaaatagacaatggaagaaaaggcaatagaaaaggagacgctggtaa aaaaggcgataaaaaggaaaatgaactgtttaatactccagaagaaattggtgtggtgcaaaaaacatacagtcgaaaat gtaaaaatggaaaagaagtaattagtaagagaaaggtcaaacaatggttgaagagtgcagatcaagttgaagctgttgat caggttatggttcctgagtctgttccaaatgaccttgaagatgaccttccctgctcaggtacaagctctgccaccgatga ccttgacatagctcctaatatggacgattttgaagagccaaatttagaaatccaaccagtggaggtcatagaaaaactca attctcaggagttagaggatcctattcctaagtcacatgacagccatgtgaccaatcccctggaatctgcagcgggcaaa agtcaaaataggggaaaattattggaatcacagaacacaaggtcagatagtcacactgaggatcaacatcaggataatca gagtaagaagtctctgaaaaacggtaaaaagttgtcattatcgaaaccgatgattcaagatactggtgtactggattcag atatcgtacctgagaccccaatgatgagcaactttccatatgaagggattatgagtagaacaactcgaggagaaaatagt aaaaaagcaaacaaaatacagagtaaggaaatacatggtaagggcttcgagcaaccattaaatgtagatgaagttgatgg caatacaaccgcagaggccatgtgtgaaagtgagttagcggaagaagatgtagtagcagacacttgtgaaacccagatga aggatgactccacaaacactatatccactgatatagacacggaatcggtaatcaaatcttctggagatatttcgatttca aagcggaaatcttgtgcattatcaagaacaaagctgaagtcaaactccagtatgaaaaatttatccatgaagaagaacat acctgaaaaatatgtagagaaatcgttagataagacagactctgaggaatttgtcaaatcttctgtacaagaaccagctg gggggacggataccgaaatagtttctactcagaaatctgagtcggttgttcattatacacaaatttccacccaagatagc gtgtcgctgctacagcctcaaaaactttactctccttctatagactcaattacgaactccgtgactgatgtgtctgacca tataatggtcgaaccaagcgaagagccagtcttgaagaagccgaagagaaagtgcttctctctgagtaaaagtcctaatc gtgctgaaatcaaaaaggtaaattccattgattctgatgttatagagaaggatgggattgatagagaggtcataacattg tcgggatggtctggctgtgatattagggaaagtgaaaacaagaaaacaaaaactacaaaacgtaataaactgaaaagaac aaagactaacaaaaaacaaagtcccggaagttcagattcgagagaggaaattcatattgataaagatgatgatgatgaaa tagtaaaatcatcacgttcaaattctacaagtgcttctagagcagacgatgatgatgttcaaactgggaacaatgttgtc gtcatggaaacagtcgattctgcagacgtaaatattgatgacgttagacaagtaaattgtgatacgagtggaaatgtgga aggaatagaggctgtacctgaaactatagaaactgaagttgtaatgaatagtggtaaacaagatctgaatgatgtagaca cttgtatggaagatggtatagaggaagaaaaaggagacgtaggtaaaaactatactgaggaccaaaataaaacaaatgga atgattggaaatagggcaaaaaatgattatcctgaaaaagttcaaaatgtggatgacatgcagaaagagaggcaagaggg agtgtgtgatgtggaaaatgtccgcggtatgacttctcaagaggaactgacttctacgttactttcgaacagaacaataa gaaagcgtgaaaaactggaaaagtcacgactggagtcacaggacgaattgccctctacgttactgtcgaacagaacggta agacagcgtgagaagctggagaggtcgcgacaggagtccccggatgacatctttatgatggattctgaatatcccgaagg tggaacggaaagtgaagtcatggtagaacagaatcaggagggcatgttagacctgctggctatagattctgatagtgagc gtgtctcacaagcctctcagaggtctgctgaaggtgaagggaagaatttggagagggaggagggtactagtaattctaca gggagtcgggagaaggaaaatctattacaaaaggaacctacagagggaggtagtgaaaggatagggacaaatctggtagg aaatagtgagaatgatataatgtgctctgaagatgatgttaatagaatagggacatgtagtgatattgttgcaccgtctg ttaccagtgatagtgttttggcaaaagtgagtcagaaaacacctgtcaaacaaaagatgggaggaagaaaaataaaacga gggttggctgcaaaattttttaaagagctgaatttatcacaaccaaataaagaaactgtttcggaagatgaaaacatacc tgcagtgcaaaagtcaacatctagggatgcttcacctacgtttgacagctcacctcataaaggttcacatagtgtctcgc aaagagtatcattgcagacaggtaagaggcaaaacgaggttactgaaatttcagatcaatctggacaaagcgcagatgaa aacgaggaagacctcaatgaagttgagcaggctgaagaaaataagaatgttgttgtagattttgatgaagaagttgaaga aagagatgaagatgtcatggattttgaggaagaggagaacccaactgtaggcacagaagttgacattattcccgattcag ttcaagatgaggtagaggtgggtcgtactccaaagaaattcattacaatggcaaaacgtgtctcaccgaaagttttatcg gttactaagaatcatctcagcaacagcatggaagttgttgatattggagatgagtgttcaccaaaacacaaacaaatcat ccaggtaaatgctgaggaaggggagtgttcaaaaagaagaaaatggaaggatggtaccaaaaagaggaaacagaagagta aagttcgtatgacaacaggttcccccagcagctcaccgcttcctgatgtgtttggaacgtcccgcaagaattcaagtcag gctgagagttgtgacagtaataatgatgatggtgatgacattgaagatgatgatgatgaagatgatgaccctgttctgat caagagaaattcaagtgattttgacgacatgcgctgtctagatgaaggtgactcggactccacccagatgccgcattctg taaagttaaccagatgtggcagcacaaaagaacgacagaaaggggaaataaacagtaggatagaggaagaagatggtcat aatgatgatatgttagatgattccaaagatgacggaagtgaagatgattcgagtgactttgttcttcattcagggaaaga agaggaggatgttgagcctgatgatcttcaaaataatgaatctgatgacgatgatgatgatgttgtgtcatctaaaagaa aaaagactgggagaagaatactcggaagtgacgatgatgatgacgataattctgtgatagaagtagatgaaaggaatgat aatatgatagatgatgatgaggaggaggaattagatgatgatgctgatgtgatgatagtagataatgatgcaaaacagac aaagaatgataaggaagtgatttctgtggacaattgtgaagcagaaaactttgaggagagacaattcaacacagaagaaa ggaaagatgataatgaagaagaaaataaagatgagagtgatgatgatgatgatgtggttgttgtgaagaagacaaaatcc caggtcatagacgacagcgagtctgatgtaaccaattgtagccaggagacgagttccgatagacaaggtaatctgacatc atcatcggctttctcctcacagagtgacatattatctacagaagaccaagccaaactcgcagaaaatttagagagtatgc gacgtgaaatagccagagtggaggctaacttagctgctgctagacgtcagagtctaaatctgtctcatagtgggaagagt gggagtaaagcttcaggttcaaaagcagagtctaacgcaaacatcagtagagaatccatagaccaggtagaagtttgtgc agagacacctatgaaggtaaatgagacagtgatggtggaggaagaagaagaagaagagaagatagccgactttcactccg agggggacagtagtgatgacttgtttctctcccctcccccacccacaccaccaccctcagatgaagaacaggaccaagcc aaactcgcagaaaatttagagagtatgcgacgtgaaatagccagagtggaggctaacttagctgctgctagacgtcagag tctaaatctgtctcatagtgggaagagtgggagtaaagcttcaggttcaaaagcagagtctaatacaaacatcagtagag aatccatagaccaggtagaagtttgtgcagagacacctatgaaagtgaacgagacagtgatagtggatgaagaagaagaa gaagaaaagatagcggactatcactctgagggggacagcagtgatgacttgtttctctcccctcccccacctacaccccc accctcagatgaagaacagggacaagttgagttagacctacccgaatcggtaaaggaagcagacagattcctccaacagt tccgatcagacaggaaagtatcgtcaaaacctttggaaaaagatgctcctacatgtatttcttcaacgccatccaagcca ctatcacaagatgctgtcaagtcatcaacaccatctcatgtttaccattctacacctaaaaacggaaaggtcatatcacc attcagttcacagaacaaagccagagttatttcccctttaacccagaactacaagaggtcaccactacagtttgtttcat cacaaagaagatctggttccgttatgctgtcagagaataataagagattcccctctccacttcagactaagagggggctt tcccagggtgttagtgagaggattcccctcagtcccttggttataaatagcagccaatcacagcatgcccaggagaagca gccaagcagagtgtttgcagcaacaagtctgcttttaccacagatgagggagctgcagaagttactacaagaacaaggct gtcagttcagtgccaagtttactgatgatgtcacacacctgatagtgaagactgacccccaggggtgcagggtgtgtgag aggacactcaagttcttccaggcagtgtcccgggggtgttgggtgctggattaccagtatatacaggactgtagatctgc aggcagaattctccctgaggagcggtatgagattttaggtgatacagttacgggggatcgtcattttggacccaggaagt cacggcagagtaaggagagagacttgtttgaggattttcagttcatcgttataggagatagcaggggactgcagcaagat gaccttaagtccttgattactgagtgtggggggagtgtggtatcacatccagaccagattccctccgactatcacaggct ggtagtaacatgcactgatatagatggagatgacgaggacacagaaacaaggtcgtcacaggagttcaaggtcataaaca ggttatacaggcttcatcacatgataacagtatccagggagtgggtgttagacagtctgactctgtatgaagtacagcct atacaagagtatgtactgaccaacgttaaaggaatgatcctaccaaagttctga |
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Protein
| Protein ID | pfu_aug2.0_1108.1_28060.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1108.1_28060.t1 MTMSTTTKAMMVMMMIFDDDDDDDDDDDDGDDGGSGCGDDDDDDDDDDDDDDDDDDDGGSEDRKMSENKADKKVHNLIGL MQKNLECSICLDLLNNPVSTKCDHPFCNFCITEFLKTNRSVPCPLCKTPVTKRSLRERPQLSKIVDDVRQLVDAFQKDTG NLFSPSRCPQSMEFALGSPDQLLTKEQRGTKRKKFLKTNRSVPCPLCKTPVTKRSLRERPQLSKIVDDVRQLVDAFQKDT GNLFSPSRCPQSMEFALGSPDQLLTKEQRGTKRKSNSLERKNVRNVRQSKRRRSDVCEAGDASSESKAETDSGNNTLYGD GDASRPTLNHVNGNIDACRSLVQHVLGNGEASVIGRRADNQKATTSETAEKIVNSKTSKRNKKHNATEELLNYIENGSCG AIDEFEPSADEEGKSNVEVTEKGTCSNVSEAERKKVPDASPRKADNLFERLSGLSEDGFNEDCRLESGFSLEDIIGDRSI RREGNVRKRDAQIDNGRKGNRKGDAGKKGDKKENELFNTPEEIGVVQKTYSRKCKNGKEVISKRKVKQWLKSADQVEAVD QVMVPESVPNDLEDDLPCSGTSSATDDLDIAPNMDDFEEPNLEIQPVEVIEKLNSQELEDPIPKSHDSHVTNPLESAAGK SQNRGKLLESQNTRSDSHTEDQHQDNQSKKSLKNGKKLSLSKPMIQDTGVLDSDIVPETPMMSNFPYEGIMSRTTRGENS KKANKIQSKEIHGKGFEQPLNVDEVDGNTTAEAMCESELAEEDVVADTCETQMKDDSTNTISTDIDTESVIKSSGDISIS KRKSCALSRTKLKSNSSMKNLSMKKNIPEKYVEKSLDKTDSEEFVKSSVQEPAGGTDTEIVSTQKSESVVHYTQISTQDS VSLLQPQKLYSPSIDSITNSVTDVSDHIMVEPSEEPVLKKPKRKCFSLSKSPNRAEIKKVNSIDSDVIEKDGIDREVITL SGWSGCDIRESENKKTKTTKRNKLKRTKTNKKQSPGSSDSREEIHIDKDDDDEIVKSSRSNSTSASRADDDDVQTGNNVV VMETVDSADVNIDDVRQVNCDTSGNVEGIEAVPETIETEVVMNSGKQDLNDVDTCMEDGIEEEKGDVGKNYTEDQNKTNG MIGNRAKNDYPEKVQNVDDMQKERQEGVCDVENVRGMTSQEELTSTLLSNRTIRKREKLEKSRLESQDELPSTLLSNRTV RQREKLERSRQESPDDIFMMDSEYPEGGTESEVMVEQNQEGMLDLLAIDSDSERVSQASQRSAEGEGKNLEREEGTSNST GSREKENLLQKEPTEGGSERIGTNLVGNSENDIMCSEDDVNRIGTCSDIVAPSVTSDSVLAKVSQKTPVKQKMGGRKIKR GLAAKFFKELNLSQPNKETVSEDENIPAVQKSTSRDASPTFDSSPHKGSHSVSQRVSLQTGKRQNEVTEISDQSGQSADE NEEDLNEVEQAEENKNVVVDFDEEVEERDEDVMDFEEEENPTVGTEVDIIPDSVQDEVEVGRTPKKFITMAKRVSPKVLS VTKNHLSNSMEVVDIGDECSPKHKQIIQVNAEEGECSKRRKWKDGTKKRKQKSKVRMTTGSPSSSPLPDVFGTSRKNSSQ AESCDSNNDDGDDIEDDDDEDDDPVLIKRNSSDFDDMRCLDEGDSDSTQMPHSVKLTRCGSTKERQKGEINSRIEEEDGH NDDMLDDSKDDGSEDDSSDFVLHSGKEEEDVEPDDLQNNESDDDDDDVVSSKRKKTGRRILGSDDDDDDNSVIEVDERND NMIDDDEEEELDDDADVMIVDNDAKQTKNDKEVISVDNCEAENFEERQFNTEERKDDNEEENKDESDDDDDVVVVKKTKS QVIDDSESDVTNCSQETSSDRQGNLTSSSAFSSQSDILSTEDQAKLAENLESMRREIARVEANLAAARRQSLNLSHSGKS GSKASGSKAESNANISRESIDQVEVCAETPMKVNETVMVEEEEEEEKIADFHSEGDSSDDLFLSPPPPTPPPSDEEQDQA KLAENLESMRREIARVEANLAAARRQSLNLSHSGKSGSKASGSKAESNTNISRESIDQVEVCAETPMKVNETVIVDEEEE EEKIADYHSEGDSSDDLFLSPPPPTPPPSDEEQGQVELDLPESVKEADRFLQQFRSDRKVSSKPLEKDAPTCISSTPSKP LSQDAVKSSTPSHVYHSTPKNGKVISPFSSQNKARVISPLTQNYKRSPLQFVSSQRRSGSVMLSENNKRFPSPLQTKRGL SQGVSERIPLSPLVINSSQSQHAQEKQPSRVFAATSLLLPQMRELQKLLQEQGCQFSAKFTDDVTHLIVKTDPQGCRVCE RTLKFFQAVSRGCWVLDYQYIQDCRSAGRILPEERYEILGDTVTGDRHFGPRKSRQSKERDLFEDFQFIVIGDSRGLQQD DLKSLITECGGSVVSHPDQIPSDYHRLVVTCTDIDGDDEDTETRSSQEFKVINRLYRLHHMITVSREWVLDSLTLYEVQP IQEYVLTNVKGMILPKF |
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