Gene
| Gene Model ID | pfu_aug2.0_1108.1_28064 |
|---|---|
| Locus | scaffold1108.1 : 154706 ... 187390 : + |
| To GenomeBrowser | scaffold1108.1:154706..187390 |
| Genes list of scaffold | scaffold1108.1 |
| Synonym | pfu_aug1.0_20319.1_47376 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1108.1_28064.t1 | 1 | 1 | NACHT | 330 | 490 | 7.8e-07 | 28.8 | 4.3e-09 | 5.9e-06 | 26.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1108.1_28064.t1 | gi|260823725|ref|XP_002606819.1| | hypothetical protein BRAFLDRAFT_82460 [Branchiostoma floridae] | 3.0e-16 |
Transcript
| Transcript ID | pfu_aug2.0_1108.1_28064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1108.1_28064.t1 atgagaaccttactgatcttactggtagtaataatgatgatgattgcctatgcagccagccagaacgcaggagctgccct tgcctacatgtacctcatgaggaacaggggaggcggacgtaaccccttctttcagagaaaggggaagcagtttgactgtc catgtcagtttgactctaagcaagggataacaacaaaaggcattgacgtcacaatgtgttgtctacttatcaacagcact tgtcatggagttgatatcaaacatatatcaacaataagagaaatacgcaacaatctcattcaccgtgaaagagcatgttt ggatctacgtacttacaacggttattggaacagagtgaaaacagcaatatgtcagctagctaaaagcgtgtcgtctgcac tgcacacagatacagtgaaaatgatagaagaactagaaactcgtataatggattctgatgaactagaactaaggaacttg atggtagacgaacaacgttttacagatctgaaagaggatatttctggtatggcagacagtttggagcagacaagggatga aatgacacaaatatcacagggtttgactaagaaggtgaaacaggtgcaggatgaaactcaaaagaaaatgtcacaaatac aaagggatgttggcaaagaaattaaagaactacaagaagagctcagacccattcagcagaagtcgaacgataaaaaatat gaaacaaaggcggacgcgtcgtcacagcgtaagaaagacttaaccagacagactaaacaaacattgcatactgcaaggca ggcaactcagcaaacgccagactttgacataggaagctttaattatgatatgcctaaacatattgaagtcacacaaccaa aagacataattgatttcaagatagatggttatattactgaggaatataacatgagagaagtaacagacccaaatgacata tttaaaaaagatggtaaatatgccagaaggatatacatgttaggagatgctgcacacggtaaaaccacttactgtttatg gctcttgcggaaatggtgtgatgctaaggaaaaggaaaggatgggacaggtagatttcgataagtgggaagaagaaatga gaagatttgattttgtctttctgattaagtttcgtaatattcatgacccaaatctagtttcagttaaagatatgatctgc caggacgcatttgagagtgacatacactgtcatgatgccatacgttgcgtattatcatctgacgagtatcaaagttttat aatcatggacggactggatgaatggtactcaaatagtgaaagcaacatgccaaatattgacgtatctgggagtgtaacgt gctttatttcaatgagaccatgggtttttccgttattgttaaagaaaccacaacacagtgacagagtaatagaaatcctt ggcttaagtgaaagtggaatggaaaatgttatcaagaatgtactgataaaccgttatgaattgaatgaggactctccaaa atatacacatataaatgataaaatactgaaatatttagaagatgacaatgtaaaatctttgatgcagattcctttgttag ctgttgtttgtgttcagatatggtatgaagggaaacaggttggggacggtatgacaagtttttatgccgagatgttaaat atgttaatagagagagcacatgaaaaacatagaattgatataaaacaacatagaacagtaggtttcaattcccctgaaat cttttctgaacatgaaaatattgaaagctgtttttctgtgctgttaaagttagcgaaagtagcttatgaaggattgctat cttctgaaaccaacttagtatttcagaaaagaaaattagaaagagaaataggagagagagaattgcagtttgccctagat gttggattgattagccaaaaagaagcacgcagtctcacaacgaagaacgtaagtgttaatttctttcataaatccataca agaattcttggctgtaatctacattgtgacaaacaaagatgttagtgactcattctgtaaaagaatgtccaatgttaact ttattatggagttgtctaatgttattatgtttatatgtggtatgtgtccgtctatgggtactgttatttcacagcgtgtt gtaagtgttatagacagtgacacagagatctgtaaatacaggcaatcggcaggaataaacattatattgagagaacttta tagactgcaggtacgttgctataaagaattgaagtacagatggactgacagtccattgacatgccacgtatcagatattt atgttgatgaaaactgtgacatagaagcagcgatggtgacaagggaactcttttctgaccagagtgtagatataaggtcg ctcgtgttattgtacgtacccactaacggaacgttgggtatcccaaataaagagctaaatgagttcttgtctaacaaaca caacaacacaaggtcacttgttatggttgaaatcaatggtgatgacaccgagaggtcacttcatcacatatctataccca cattaaagactttgtatctacataacgttaaaataaatattgaccttgacgttgctgctcggcctcctctgttaaaagac atggaatcactacaagtgtttggtcttgtgagaattactttagataacagagaacttggaatgtcaaaattgacatcact acgtgtgttagtacttgatacggtaacattagttgacagagaacttactttttccggtttgaaatcactacgtgagttac ggctgtcacgtatgaccctgggtaagacaggacttgatctgtctgacgtgccttcattacatttgttaaatctatatatg gtggacctgggcaacataggacttgatctgtcaccgttgacatcactgcgggagttactgctaaccgatgtgacactggg ttacaaaggactgaatttgtctaacatgacacaattacgtgtgttacaactacgtgaggtgcttcttgttgacagaggac tggatctaattgacttaacatcacttcgagagttacggctatatcatatagctctgggtaaaataggactagacctttct tatatgacatcacttcgtaaattactggtgtctcatgtgacccttgatgtccgaggtttgatgcttcatgcttgcatggt tcatttagatgaggtacgattggtattcgttgatatgtcagcggaacaatggcaacagttcattctgtctgtgcttaaca tacggcataaatttaatgttgtactgcgtgactccgtaattgattatgagtccaaaacaaagatccggtcagctcaagac tacaatttaacacgggatggtgttggtaagcatggtaagtatatgtttgatttcacaagagtatggccattgtaa |
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Protein
| Protein ID | pfu_aug2.0_1108.1_28064.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1108.1_28064.t1 MRTLLILLVVIMMMIAYAASQNAGAALAYMYLMRNRGGGRNPFFQRKGKQFDCPCQFDSKQGITTKGIDVTMCCLLINST CHGVDIKHISTIREIRNNLIHRERACLDLRTYNGYWNRVKTAICQLAKSVSSALHTDTVKMIEELETRIMDSDELELRNL MVDEQRFTDLKEDISGMADSLEQTRDEMTQISQGLTKKVKQVQDETQKKMSQIQRDVGKEIKELQEELRPIQQKSNDKKY ETKADASSQRKKDLTRQTKQTLHTARQATQQTPDFDIGSFNYDMPKHIEVTQPKDIIDFKIDGYITEEYNMREVTDPNDI FKKDGKYARRIYMLGDAAHGKTTYCLWLLRKWCDAKEKERMGQVDFDKWEEEMRRFDFVFLIKFRNIHDPNLVSVKDMIC QDAFESDIHCHDAIRCVLSSDEYQSFIIMDGLDEWYSNSESNMPNIDVSGSVTCFISMRPWVFPLLLKKPQHSDRVIEIL GLSESGMENVIKNVLINRYELNEDSPKYTHINDKILKYLEDDNVKSLMQIPLLAVVCVQIWYEGKQVGDGMTSFYAEMLN MLIERAHEKHRIDIKQHRTVGFNSPEIFSEHENIESCFSVLLKLAKVAYEGLLSSETNLVFQKRKLEREIGERELQFALD VGLISQKEARSLTTKNVSVNFFHKSIQEFLAVIYIVTNKDVSDSFCKRMSNVNFIMELSNVIMFICGMCPSMGTVISQRV VSVIDSDTEICKYRQSAGINIILRELYRLQVRCYKELKYRWTDSPLTCHVSDIYVDENCDIEAAMVTRELFSDQSVDIRS LVLLYVPTNGTLGIPNKELNEFLSNKHNNTRSLVMVEINGDDTERSLHHISIPTLKTLYLHNVKINIDLDVAARPPLLKD MESLQVFGLVRITLDNRELGMSKLTSLRVLVLDTVTLVDRELTFSGLKSLRELRLSRMTLGKTGLDLSDVPSLHLLNLYM VDLGNIGLDLSPLTSLRELLLTDVTLGYKGLNLSNMTQLRVLQLREVLLVDRGLDLIDLTSLRELRLYHIALGKIGLDLS YMTSLRKLLVSHVTLDVRGLMLHACMVHLDEVRLVFVDMSAEQWQQFILSVLNIRHKFNVVLRDSVIDYESKTKIRSAQD YNLTRDGVGKHGKYMFDFTRVWPL |
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