Gene
Gene Model ID | pfu_aug2.0_1109.1_31449 |
---|---|
Locus | scaffold1109.1 : 170336 ... 175959 : + |
To GenomeBrowser | scaffold1109.1:170336..175959 |
Genes list of scaffold | scaffold1109.1 |
Synonym | pfu_aug1.0_2637.1_30198 |
Manual annotation
Hmmer Search for Pfam
query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
---|---|---|---|---|---|---|---|---|---|---|
pfu_aug2.0_1109.1_31449.t1 | 1 | 1 | TGFb_propeptide | 80 | 261 | 1.4e-26 | 93.2 | 3.2e-30 | 2.3e-26 | 92.5 |
pfu_aug2.0_1109.1_31449.t1 | 1 | 1 | TGF_beta | 323 | 351 | 1.0e-05 | 25.7 | 3.3e-09 | 2.5e-05 | 24.5 |
Blast Hit to nr / sp
query | Subject ID | Subject Name | evalue |
---|---|---|---|
pfu_aug2.0_1109.1_31449.t1 | gi|676436879|ref|XP_009048024.1| | hypothetical protein LOTGIDRAFT_111943 [Lottia gigantea] | 0.0 |
pfu_aug2.0_1109.1_31449.t1 | gi|157837977|ref|NP_033886.2| | bone morphogenetic protein 10 preproprotein [Mus musculus] | 0.0 |
pfu_aug2.0_1109.1_31449.t1 | gi|148666791|gb|EDK99207.1| | bone morphogenetic protein 10 [Mus musculus] | 0.0 |
pfu_aug2.0_1109.1_31449.t1 | gi|3873289|gb|AAC77461.1| | bone morphogenetic protein 10 [Mus musculus] | 0.0 |
pfu_aug2.0_1109.1_31449.t1 | gi|589943868|ref|XP_006984632.1| | PREDICTED: bone morphogenetic protein 10 [Peromyscus maniculatus bairdii] | 0.0 |
Transcript
Transcript ID | pfu_aug2.0_1109.1_31449.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1109.1_31449.t1 atgaccacaagacccactagtgattgtaaggactgcgatgacaaggacgctcaaaataggaccaaacgattcacccagga ttacgattatagtgaatactacgacgatatcgaaattggaatcatagaggagaagaaaacactacaaaacagtcgtattg caccacctggcttgaatatagacaattctgttaggtctttatcgcttagtaaagacttaagggtcaatatagaattgaca ccaaggtcgcctaaagaggcacctgactatatgatggaactgtacgatagattctctaaaaaccgacttaatcatccatc gtcgaatattgttagaagcttcagtaatataaataacgaagatcctacagtccagcctgttaatacagatctcgctggta gaacaactcgtgtccatacaatggtattcaacatcaccagtatatcggtagaagaaaatattgaccttgccgaactcaga ctttataccctggtacagagggacagaataatgtacataggggttgacaggaaagtctcggtgtatgaggtcatggaaaa tgacgcaggtttccatcttatagattcaaaacatatctatggcagggacagtgcttgggaaacatttgacgtcacatcag ctgtaagacggtgggtacacaaatttaactctatacagattttggagattcgtatagaaagtgtttttcattcagtgtcg atgggggatttagatattttaaccaaaaacagtaacaagaatgagcctctgttagttgtcttctcaagtgatgacagaaa aagaaaacttcacgaaaacgaacgtcatgaattggtgacgcatgaaatggatatgtacgacgtccaagatgatctcagtg ttgattcaccatctaatgacaatataacagatgacactaacagtgatgtagttctcaacagatttaaacgtagaggtcgt cgacatgctgtttgcaggagaaagcctatgtatgtaagcttcgaagaaatcaattgggattcctggataatcgctcccag gggataccaggtatgtgttagtacatga |
Protein
Protein ID | pfu_aug2.0_1109.1_31449.t1 |
---|---|
Definition | - |
>pfu_aug2.0_1109.1_31449.t1 MTTRPTSDCKDCDDKDAQNRTKRFTQDYDYSEYYDDIEIGIIEEKKTLQNSRIAPPGLNIDNSVRSLSLSKDLRVNIELT PRSPKEAPDYMMELYDRFSKNRLNHPSSNIVRSFSNINNEDPTVQPVNTDLAGRTTRVHTMVFNITSISVEENIDLAELR LYTLVQRDRIMYIGVDRKVSVYEVMENDAGFHLIDSKHIYGRDSAWETFDVTSAVRRWVHKFNSIQILEIRIESVFHSVS MGDLDILTKNSNKNEPLLVVFSSDDRKRKLHENERHELVTHEMDMYDVQDDLSVDSPSNDNITDDTNSDVVLNRFKRRGR RHAVCRRKPMYVSFEEINWDSWIIAPRGYQVCVST |