Gene
| Gene Model ID | pfu_aug2.0_111.1_03630 |
|---|---|
| Locus | scaffold111.1 : 56036 ... 58357 : + |
| To GenomeBrowser | scaffold111.1:56036..58357 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug1.0_21058.1_54729 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| 28s ribosomal protein mitochondrial | GO:0043229 GO:0044444 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_111.1_03630.t1 | 2 | 1 | Ribosomal_S16 | 18 | 69 | 4.5e-16 | 58.3 | 1.0e-19 | 1.5e-15 | 56.6 |
| pfu_aug2.0_111.1_03630.t1 | 2 | 2 | Ribosomal_S16 | 97 | 114 | 4.5e-16 | 58.3 | 0.098 | 1500.0 | -1.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_111.1_03630.t1 | gi|395820909|ref|XP_003783798.1| | PREDICTED: 28S ribosomal protein S16, mitochondrial [Otolemur garnettii] | 6.0e-32 |
| pfu_aug2.0_111.1_03630.t1 | gi|240848827|ref|NP_001155501.1| | 28S ribosomal protein S16-like [Acyrthosiphon pisum] | 2.0e-30 |
| pfu_aug2.0_111.1_03630.t1 | gi|291241144|ref|XP_002740463.1| | PREDICTED: 28S ribosomal protein S16, mitochondrial-like [Saccoglossus kowalevskii] | 4.0e-30 |
| pfu_aug2.0_111.1_03630.t1 | gi|746837617|ref|XP_011049312.1| | PREDICTED: probable 28S ribosomal protein S16, mitochondrial [Acromyrmex echinatior] | 8.0e-30 |
| pfu_aug2.0_111.1_03630.t1 | gi|340724898|ref|XP_003400815.1| | PREDICTED: probable 28S ribosomal protein S16, mitochondrial [Bombus terrestris] | 9.0e-30 |
Transcript
| Transcript ID | pfu_aug2.0_111.1_03630.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03630.t1 atggggagaggtccatttaatagttccaagaagatgattagacttgcgctacatgggtgtacaaatcgtcccttctacca cgtggtactgatgtggaaccgagccccccgagatggccgtcctctagaaaacctaggttactacgatccaatgagcaaca ttcatggagagaaagtgctggcattaaagtttagtcgaatacaagaactgtacgtcaagaagaatgtggaaatatcaact ccagttttgaaattattgggattagcaggatttctacccatccatccaagcacatctttagaggcatacagagcaaagaa gaaaatagaagaaggcacggagagttcaaatgacactgatagtacctcatcttctgtagatagtgactcacaaagcaatg cagaaaggtga |
|
Protein
| Protein ID | pfu_aug2.0_111.1_03630.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03630.t1 MGRGPFNSSKKMIRLALHGCTNRPFYHVVLMWNRAPRDGRPLENLGYYDPMSNIHGEKVLALKFSRIQELYVKKNVEIST PVLKLLGLAGFLPIHPSTSLEAYRAKKKIEEGTESSNDTDSTSSSVDSDSQSNAER |
|