Gene
| Gene Model ID | pfu_aug2.0_111.1_03636 |
|---|---|
| Locus | scaffold111.1 : 184360 ... 219687 : + |
| To GenomeBrowser | scaffold111.1:184360..219687 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug1.0_30085.1_62591 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_111.1_03636.t1 | 2 | 1 | I-set | 37 | 121 | 2.8e-19 | 68.7 | 5.6e-12 | 1.4e-08 | 34.4 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 1 | Ig_3 | 37 | 121 | 2.4e-10 | 40.7 | 1.1e-05 | 0.026 | 15.0 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 1 | Ig_2 | 40 | 125 | 1.5e-12 | 47.4 | 2.3e-07 | 0.00056 | 19.9 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 1 | V-set | 45 | 123 | 9.7e-14 | 51.2 | 1.9e-09 | 4.8e-06 | 26.4 |
| pfu_aug2.0_111.1_03636.t1 | 4 | 1 | ig | 51 | 61 | 7.4e-10 | 38.8 | 0.2 | 500.0 | 0.9 |
| pfu_aug2.0_111.1_03636.t1 | 4 | 2 | ig | 99 | 119 | 7.4e-10 | 38.8 | 0.0017 | 4.2 | 7.5 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 2 | V-set | 144 | 187 | 9.7e-14 | 51.2 | 6.1e-08 | 0.00015 | 21.6 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 2 | I-set | 146 | 182 | 2.8e-19 | 68.7 | 3.2e-11 | 8.0e-08 | 32.0 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 2 | Ig_2 | 147 | 187 | 1.5e-12 | 47.4 | 4.8e-09 | 1.2e-05 | 25.3 |
| pfu_aug2.0_111.1_03636.t1 | 2 | 2 | Ig_3 | 148 | 189 | 2.4e-10 | 40.7 | 2.9e-08 | 7.1e-05 | 23.2 |
| pfu_aug2.0_111.1_03636.t1 | 4 | 3 | ig | 154 | 189 | 7.4e-10 | 38.8 | 3.4e-09 | 8.3e-06 | 25.8 |
| pfu_aug2.0_111.1_03636.t1 | 4 | 4 | ig | 236 | 236 | 7.4e-10 | 38.8 | 1.7 | 4300.0 | -2.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_111.1_03636.t1 | gi|676463762|ref|XP_009056701.1| | hypothetical protein LOTGIDRAFT_120413 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_111.1_03636.t1 | gi|676472988|ref|XP_009059669.1| | hypothetical protein LOTGIDRAFT_125059, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_111.1_03636.t1 | gi|524871200|ref|XP_005092376.1| | PREDICTED: limbic system-associated membrane protein-like isoform X5 [Aplysia californica] | 2.8026e-45 |
| pfu_aug2.0_111.1_03636.t1 | gi|524865286|ref|XP_005089473.1| | PREDICTED: opioid-binding protein/cell adhesion molecule homolog isoform X1 [Aplysia californica] | 4.2039e-45 |
| pfu_aug2.0_111.1_03636.t1 | gi|524871198|ref|XP_005092375.1| | PREDICTED: limbic system-associated membrane protein-like isoform X4 [Aplysia californica] | 8.40779e-45 |
Transcript
| Transcript ID | pfu_aug2.0_111.1_03636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03636.t1 atgccatttgtgaggtgggccagcatcatgtatcttttgttggattttataggtaccattgttaccgtcgtcgtcatctt acccaatgttagagtacagacaatcgagcccagttttgatgtaccggttgtgaatgtaacagctattgcggggaaaacag ccatcttgccatgctcagttagcttgttaggggaccacgtggtagcatggatggctccaggagggaagctcatgacactg gagacacgtagaatcatagcagaccagcgcatcactgtagaacgtccatataccaaagattggaacctgtttatacatgg tgttaggcatgaagacagtggcagatacatgtgtcaaataaacacggaccccgtcaaaatcaaatatgtccagctctttg ttcaagaggctccgacaattctagatcagggaacaacaagtcatgtcactgtgagagagggtgcaaccgtcaacatcaca tgtaatgtcagcggcgtaccaccacctagggtttcatggtataggcgttcctcatataataaacattcagctaaagaaag cagagatcgagaggaaatgattttatcagaactcaaagtgccaacaacacaagcatcgacaactgagctcattaaaacca cacctaggtggatctacagaggagacaaagtcaacagacctcagactacagcaccaagagtgtaccacaatggaaatggt ctcagaaggccaaacggacagcaatcattccatcatgaaccagaatatgataatcaagagccaggaaacgtagctgtcac caatacgaactctgtcattttatcaacgttttgcttgttgagtataaaaaccctccttggtatgacgtga |
|
Protein
| Protein ID | pfu_aug2.0_111.1_03636.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03636.t1 MPFVRWASIMYLLLDFIGTIVTVVVILPNVRVQTIEPSFDVPVVNVTAIAGKTAILPCSVSLLGDHVVAWMAPGGKLMTL ETRRIIADQRITVERPYTKDWNLFIHGVRHEDSGRYMCQINTDPVKIKYVQLFVQEAPTILDQGTTSHVTVREGATVNIT CNVSGVPPPRVSWYRRSSYNKHSAKESRDREEMILSELKVPTTQASTTELIKTTPRWIYRGDKVNRPQTTAPRVYHNGNG LRRPNGQQSFHHEPEYDNQEPGNVAVTNTNSVILSTFCLLSIKTLLGMT |
|