Gene
| Gene Model ID | pfu_aug2.0_111.1_03638 |
|---|---|
| Locus | scaffold111.1 : 250327 ... 272269 : - |
| To GenomeBrowser | scaffold111.1:250327..272269 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug1.0_120181.1_13751 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_111.1_03638.t1 | 4 | 1 | PDZ | 181 | 238 | 3.5e-40 | 136.0 | 1.6e-06 | 0.0077 | 16.3 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 1 | PDZ_2 | 183 | 244 | 1.6e-23 | 82.3 | 6.2e-08 | 0.0003 | 20.5 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 2 | PDZ | 511 | 587 | 3.5e-40 | 136.0 | 8.4e-19 | 4.2e-15 | 55.6 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 2 | PDZ_2 | 530 | 567 | 1.6e-23 | 82.3 | 2.6e-07 | 0.0013 | 18.5 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 3 | PDZ_2 | 591 | 620 | 1.6e-23 | 82.3 | 0.0011 | 5.5 | 6.9 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 3 | PDZ | 597 | 631 | 3.5e-40 | 136.0 | 3.2e-06 | 0.016 | 15.3 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 4 | PDZ | 743 | 814 | 3.5e-40 | 136.0 | 4.4e-16 | 2.2e-12 | 46.9 |
| pfu_aug2.0_111.1_03638.t1 | 4 | 4 | PDZ_2 | 754 | 828 | 1.6e-23 | 82.3 | 4.9e-11 | 2.4e-07 | 30.5 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_111.1_03638.t1 | gi|260830007|ref|XP_002609953.1| | hypothetical protein BRAFLDRAFT_85908 [Branchiostoma floridae] | 1.0e-30 |
| pfu_aug2.0_111.1_03638.t1 | gi|657813351|ref|XP_008333989.1| | PREDICTED: PDZ domain-containing protein 2-like [Cynoglossus semilaevis] | 3.0e-24 |
| pfu_aug2.0_111.1_03638.t1 | gi|597773600|ref|XP_007250534.1| | PREDICTED: PDZ domain-containing protein 2-like isoform X2 [Astyanax mexicanus] | 5.0e-24 |
| pfu_aug2.0_111.1_03638.t1 | gi|597773598|ref|XP_007250533.1| | PREDICTED: PDZ domain-containing protein 2-like isoform X1 [Astyanax mexicanus] | 5.0e-24 |
Transcript
| Transcript ID | pfu_aug2.0_111.1_03638.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03638.t1 atggatgcactgaaaacttacttcaacagatttcgtaagttatcaagtcgctcgggtgatagatcgaactccagatcgcc taaaagacgtaaaaaagacggtctaacaagaaatgggagtttgaacgaaaacttgactcaaacttattctaatggagtca ctagtgcatcggtaagagtgttaagagaaagagcttctgatgggaacctgcgaggggatacgtctaacggagtcacaaac ggtatatcacatcgaggaagaacggatgccatgaagaacatttacgaaaagccacttctttcttcatctttgtccaattc cggattacatactagaaagagggataaaacacccccacccgccaaaccccctcgaggggataaagtgctttcagtgacca ttgagtgttcccaagacaaagatttaggtatcgtgttggacgccgtgccccatgagaatcccaatggcagcccccgggga cgattgtgtagtgagggtgcggtaacctgcagttcaagtcccctctcttcttatggtggtcacgtagtgcgagtggctca cataaaggaagggagtccggccagtaatggtcaagtaaaagtaaatgatgaggtgctggacattaatggctggagcatga ttaaggaaaatacaggtagtgctagattacttttagcaaatgcagtaagatcaggcaaagtcacaatgaccttgagacgt cggaaaaagcgacctgcaccacctccaccaccaacaaaagactacaatatggaggaaccactgggtagcgggacgtcaga aacaggagttcaatattctgttgttcaaaaggggaacaaatccatcgggaacactcatttttcacattccttagattcta ttccccgtcagttaagcaataccggaagtagcatttgtcatgacaacaattacgatggcagcaatttgactttgaactca ttaggtagccttggggggtcaaacgatgacgtgttctgtgatactctggcagacgatagggcatctttgtctcgtgttca tacctcaaatttatctgtgaattccgaaatctgtgataacaataattatgtgaaatctagtccgtctgcatgtggcaggg attctgtaatgtccaaatctgactatgtcaacatagagatcgtgaacaaaacacggacgcaaagcacttcagctgtagaa gatgtggtgcactggaatctgacacctgtagaaatggaaaacaacgaagaaacacgaagtgtgcaaatgaacactgccga aatagcccgacaaaagaggggcctgaaagcaagcacgattccacaaaatggcaatgatcttacctcttttagatcggatc ctgatattatgaatcaacataaacattactataagaaaaaatctaaaggttggcggtctctccatgacaggtctgagaac cacacccctacctcgtgctgcagctcgtcagagagtagtcatggaaactcaccacccaagaagagaatagttacccggat gcacctcttgaaggacgagtacggcctagggatccacattgcagggggtaagggatctagaaaaggggatattggaatct ttgtcgccggggtcacggagtccggagcggccttcagagatgggcgattgaagagaggtgacgagttactgatgattaac gggaaaagtttgataggcctgacccacggggaagcagtggaggtactcagaaactcccccaaactcgtacaactggttgt ggctgctaaatctcaggcgatgttttttcaaggcgatgagatcatacagttgaatggtcagcagatgagaggactgaccc acagtgaagctctggccaaatttcgccagttgaagaaaggccctgtaaccatagtattctgtaggaaaaccaggtcaagg gcatcaagcccatcagtgagattagccaaaacctcctcagcggacttctcctcagagggtagtccagtgtccactcctgg tcactctccctatggtagctgttctgacttgaccacactagatgaccatgaggatcccataaatacaataaactgtatat ctacctcaagcagctatgacaattttcttgatgtcaatcagacagtttctccagtgcaatttgaatcttccgaaagtgca attttggatgttagtgctagtgctggtgaaaggccaaaactttcacagaaagaggaatctgactacgaaataacactaga aaaagagcttggtattgggttgggaatttctctgataagaaaggatactgctggtatcagccacatctatatccaggata tataccatggttctcctgcagacaaggatgggagactacacaagggtgatatgataaccgaggtgaatgggaaaaccatg caggggttatctctcttagatgcgtaccagtacttcagaaatttacaacctggatctgttaacattgttgtgaaaaggaa aagagattttctggatgacgataatgaaaactattaa |
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Protein
| Protein ID | pfu_aug2.0_111.1_03638.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03638.t1 MDALKTYFNRFRKLSSRSGDRSNSRSPKRRKKDGLTRNGSLNENLTQTYSNGVTSASVRVLRERASDGNLRGDTSNGVTN GISHRGRTDAMKNIYEKPLLSSSLSNSGLHTRKRDKTPPPAKPPRGDKVLSVTIECSQDKDLGIVLDAVPHENPNGSPRG RLCSEGAVTCSSSPLSSYGGHVVRVAHIKEGSPASNGQVKVNDEVLDINGWSMIKENTGSARLLLANAVRSGKVTMTLRR RKKRPAPPPPPTKDYNMEEPLGSGTSETGVQYSVVQKGNKSIGNTHFSHSLDSIPRQLSNTGSSICHDNNYDGSNLTLNS LGSLGGSNDDVFCDTLADDRASLSRVHTSNLSVNSEICDNNNYVKSSPSACGRDSVMSKSDYVNIEIVNKTRTQSTSAVE DVVHWNLTPVEMENNEETRSVQMNTAEIARQKRGLKASTIPQNGNDLTSFRSDPDIMNQHKHYYKKKSKGWRSLHDRSEN HTPTSCCSSSESSHGNSPPKKRIVTRMHLLKDEYGLGIHIAGGKGSRKGDIGIFVAGVTESGAAFRDGRLKRGDELLMIN GKSLIGLTHGEAVEVLRNSPKLVQLVVAAKSQAMFFQGDEIIQLNGQQMRGLTHSEALAKFRQLKKGPVTIVFCRKTRSR ASSPSVRLAKTSSADFSSEGSPVSTPGHSPYGSCSDLTTLDDHEDPINTINCISTSSSYDNFLDVNQTVSPVQFESSESA ILDVSASAGERPKLSQKEESDYEITLEKELGIGLGISLIRKDTAGISHIYIQDIYHGSPADKDGRLHKGDMITEVNGKTM QGLSLLDAYQYFRNLQPGSVNIVVKRKRDFLDDDNENY |
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