Gene
| Gene Model ID | pfu_aug2.0_111.1_03650 |
|---|---|
| Locus | scaffold111.1 : 421341 ... 440124 : - |
| To GenomeBrowser | scaffold111.1:421341..440124 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug1.0_2075.1_66191 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_111.1_03650.t1 | 2 | 1 | Nrap | 67 | 542 | 0.0 | 722.7 | 0.0 | 0.0 | 411.2 |
| pfu_aug2.0_111.1_03650.t1 | 2 | 2 | Nrap | 537 | 950 | 0.0 | 722.7 | 0.0 | 0.0 | 311.9 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_111.1_03650.t1 | gi|147901199|ref|NP_001084843.1| | nucleolar protein 6 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_111.1_03650.t1 | gi|62900684|sp|Q6NRY2.2|NOL6_XENLA | Nucleolar protein 6 [Xenopus laevis] | 0.0 |
| pfu_aug2.0_111.1_03650.t1 | gi|632959060|ref|XP_007895400.1| | PREDICTED: nucleolar protein 6 [Callorhinchus milii] | 0.0 |
| pfu_aug2.0_111.1_03650.t1 | gi|597759907|ref|XP_007243971.1| | PREDICTED: nucleolar protein 6-like [Astyanax mexicanus] | 0.0 |
| pfu_aug2.0_111.1_03650.t1 | gi|260799134|ref|XP_002594552.1| | hypothetical protein BRAFLDRAFT_279825 [Branchiostoma floridae] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_111.1_03650.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03650.t1 atgtcacagagagctgctcgtcagaaaaaaggagtgaagaagtttgttccacgacatacacattggacgatcaaagaaaa gaagcaattactacagcttcttaaaagtatacagactggcccttggctacaaagttgtattacaaagttagaccttgagg accagttaatggaccatggaggtaataaggtcctcactgtattgtcaagtctggtccagtacctgaagctagcactacag gaacgtataaagctactgcagctacagctaataccagaaaacagcgaatgggagatatctgaaagtccgtcatctgaaga caaaggacagataactgttggaatgttgttaaatccagagtacgcaacaaacattctggaaaagggacctccagctgact ctcctgaggctaaagaattccgagaattctggggtgagaaatcggagttaaggcgctttaaggatggcagtatatgtgaa gctgtagcatggatgaatgatggaaagatatctgagaggagaaatgtgtgtcggtctgttataagacatgtactgtttag gcattttgagataccccagaagagtatactgtacatccacaatcagcttgacgtgttactgcagcagagagctgacctgt cagacagtacgattagctgtgatactggagagatggaacatcaacaaataatgaagagctatgatagcttgtgtaaatta ctccgtaacctcaaagatctgcctcttaccattaactctatacaaggaacctcacctagtcttagattcacagaggtagt acctcctttaccgtcagtgtgtaaggtagggatatatagaggggagggtgaggataaaagggagttacctttaccgaaga aatgtccattctacacaccttacctgaaagtgatctgtcatttagagggtagtggtaagtggccagatgacctccaggca ttcagacatttaaaggcagcatttcacatcaagttaggagaagttctcactgaccaacaatcattacctgttcacatcac tccaacacatgtggatgtaaagaaagatggctttgttttccgcgttgagctggcttatacaagggaaatagcgttaatga agctctataagaccccagaaggcatggtaaaatacaaggacactccagaatcattgaacttagaaagggaaatacaacat ttaccccagttaaccagcacattacatggactacagcagcagcataactcctttggtgccgtagcgagactggccaaacg gtggatagcatcacaacttctgactgactacatctcagaggaggctatagaacttatgactgcgtacctgtatatctcac ctgaaccatactctgtacctggatgtgccatagtaggttttcagagatggttacatttattggccaatcaagactggaag atgtcaccactgatggttaatctcaacaataagttcacaagtgatgacttcattgagataccctccagatttcagaaaga gagaacaactttacctctgatgtttatagccacccctgaggacaaaactatgtcaatatggacacgtaaaatgccaactg caccgttactgaatctgatctgtcatttagagggtagtggtaagtggccagacgacctccaggcattcagacatttaaag gcagcattccacatcaagttaggagaagttctcactgaccagcaatcattacctgttcacatcactccaacacatgtgga tgttaagaaagatggctttgtattccgtgttgagctggcttatacaagggaaatagcgttaatgaagctctacaagaccc cagaaggcatggtaaaatacagggacaccccagaatcactgaacttagagagggaaatacaacatttaccccagttaacc agcacattacatggactacagcagcagcataactcctttggtgccgtagcgagacttgccaaacggtggatatcatcaca acttctcattgactacatcttagaggaggccatagaactaatgactgcgtacctgtatatcacacctgaaccatactctg tacctggatgcgccatagtaggatttcagagatggttacatttattggccaatcatgattggaagatgtcaccactgatg gttaatctcaacaataagttcacaagtgatgactttattgagataccctccagatttcagaaagagagaacaactttacc tctgatgtttatagccacccctgaggacaaaactatgtcaatatggacacgtaaaatgccaactgcaccattactgaatc gtatgatgttacttgctcaggaatcacttcacgtcttgtcagaaaatgtcagatctggagttatcagaagtatagagtac aagcaaatatttcgtcctccgttggatctatacgatgtgatactacatttagacgtaaagcagtgtgccagacgtcacca agcattagatagccacacacaagatgacataatatgtccaacgtacggagtaaggaaaacccagaagagggaggccatgt ttatgcctgtgacagattatgatccagttcagctgtactttagagatcttaaggaatcctatggacatttagcattgttt ttccatgataagtatggaggaaatctaatagctgttctgtggaaaccatctgcatttactccacaggaattcaaggtatc ccatgttcatggctgtacagtacagaacaaaagtggggacatggatatacagatggtgccaaatgttgaggcaattatac gggactttaaactgttaggtaccggacttgtacagtcagtggagactaagacggacaagtggaaaatataa |
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Protein
| Protein ID | pfu_aug2.0_111.1_03650.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03650.t1 MSQRAARQKKGVKKFVPRHTHWTIKEKKQLLQLLKSIQTGPWLQSCITKLDLEDQLMDHGGNKVLTVLSSLVQYLKLALQ ERIKLLQLQLIPENSEWEISESPSSEDKGQITVGMLLNPEYATNILEKGPPADSPEAKEFREFWGEKSELRRFKDGSICE AVAWMNDGKISERRNVCRSVIRHVLFRHFEIPQKSILYIHNQLDVLLQQRADLSDSTISCDTGEMEHQQIMKSYDSLCKL LRNLKDLPLTINSIQGTSPSLRFTEVVPPLPSVCKVGIYRGEGEDKRELPLPKKCPFYTPYLKVICHLEGSGKWPDDLQA FRHLKAAFHIKLGEVLTDQQSLPVHITPTHVDVKKDGFVFRVELAYTREIALMKLYKTPEGMVKYKDTPESLNLEREIQH LPQLTSTLHGLQQQHNSFGAVARLAKRWIASQLLTDYISEEAIELMTAYLYISPEPYSVPGCAIVGFQRWLHLLANQDWK MSPLMVNLNNKFTSDDFIEIPSRFQKERTTLPLMFIATPEDKTMSIWTRKMPTAPLLNLICHLEGSGKWPDDLQAFRHLK AAFHIKLGEVLTDQQSLPVHITPTHVDVKKDGFVFRVELAYTREIALMKLYKTPEGMVKYRDTPESLNLEREIQHLPQLT STLHGLQQQHNSFGAVARLAKRWISSQLLIDYILEEAIELMTAYLYITPEPYSVPGCAIVGFQRWLHLLANHDWKMSPLM VNLNNKFTSDDFIEIPSRFQKERTTLPLMFIATPEDKTMSIWTRKMPTAPLLNRMMLLAQESLHVLSENVRSGVIRSIEY KQIFRPPLDLYDVILHLDVKQCARRHQALDSHTQDDIICPTYGVRKTQKREAMFMPVTDYDPVQLYFRDLKESYGHLALF FHDKYGGNLIAVLWKPSAFTPQEFKVSHVHGCTVQNKSGDMDIQMVPNVEAIIRDFKLLGTGLVQSVETKTDKWKI |
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