Gene
| Gene Model ID | pfu_aug2.0_111.1_03653 |
|---|---|
| Locus | scaffold111.1 : 456594 ... 476574 : - |
| To GenomeBrowser | scaffold111.1:456594..476574 |
| Genes list of scaffold | scaffold111.1 |
| Synonym | pfu_aug1.0_93144.1_28016 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| signal recognition particle receptor subunit alpha homolog isoform x1 | GO:0005488 GO:0006886 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_111.1_03653.t1 | 1 | 1 | DNA_pol_B_2 | 408 | 505 | 5.6e-09 | 35.1 | 8.8e-12 | 1.0e-08 | 34.3 |
| pfu_aug2.0_111.1_03653.t1 | 2 | 1 | SRP54 | 594 | 636 | 0.0 | 166.4 | 0.66 | 760.0 | -0.6 |
| pfu_aug2.0_111.1_03653.t1 | 1 | 1 | SRP-alpha_N | 606 | 776 | 4.7e-14 | 52.4 | 4.1e-17 | 4.7e-14 | 52.4 |
| pfu_aug2.0_111.1_03653.t1 | 2 | 1 | CbiA | 612 | 643 | 5.1e-08 | 32.5 | 0.76 | 860.0 | -0.9 |
| pfu_aug2.0_111.1_03653.t1 | 1 | 1 | SRP54_N | 807 | 879 | 6.8e-07 | 29.3 | 1.8e-09 | 2.1e-06 | 27.7 |
| pfu_aug2.0_111.1_03653.t1 | 2 | 2 | SRP54 | 908 | 1124 | 0.0 | 166.4 | 0.0 | 0.0 | 163.0 |
| pfu_aug2.0_111.1_03653.t1 | 2 | 2 | CbiA | 916 | 1085 | 5.1e-08 | 32.5 | 2.4e-10 | 2.8e-07 | 30.1 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_111.1_03653.t1 | gi|524880773|ref|XP_005097045.1| | PREDICTED: signal recognition particle receptor subunit alpha-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_111.1_03653.t1 | gi|746868054|ref|XP_011065141.1| | PREDICTED: signal recognition particle receptor subunit alpha homolog isoform X2 [Acromyrmex echinatior] | 0.0 |
| pfu_aug2.0_111.1_03653.t1 | gi|676492567|ref|XP_009065960.1| | hypothetical protein LOTGIDRAFT_133609 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_111.1_03653.t1 | gi|751238075|ref|XP_011172966.1| | PREDICTED: signal recognition particle receptor subunit alpha homolog [Solenopsis invicta] | 0.0 |
| pfu_aug2.0_111.1_03653.t1 | gi|746868052|ref|XP_011065140.1| | PREDICTED: signal recognition particle receptor subunit alpha homolog isoform X1 [Acromyrmex echinatior] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_111.1_03653.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03653.t1 atgtggctgtccagacaagaagtgactgtccagacaagatgtgactgtccagacaagatgtggctgtccagacaagatgt ggctatccagacaagatgttgctgtccagacaagatgtggctgtccagacaagatgcgactgtccagacaagatgtggct gtccagacaagatgcgactgtccagacaagatgtgactgtccagacaagatgtggctatccagacaagatgtggctgtcc agacaagatgtggctgtccagacaagatatgtgactagtagtagaagaagcctggctgtaccaaaaggctacaaactaca aacagagcgagccaaagctttatgtgaccaagcaggggtatctagtgaacatggttgcggtccagcagaatgggagaagt tccagaaagtcctgatgccaaactacagactgaaaatctaccagcagaacgctgtagccaaaactctgaaatttgacgtt ctgtacaaagggaccgtagccaacgagaggatccaaccaaaaatcttacatatcttgtacacagacaaccactacgatgc catcacctctatgcctggtctggtagaatgccaatactactgcgatttttgtgacgtggggtacagaaatgctgacagtc atcgcaacgcctgtcctgtcagatgttactggtgcttgtcttcacctccttgcctctgggaagacgccaacgtggaatgt aacagttgtggcggtagcttccatagtctgagatgttactggaaccatttcaagcccaacaaggccggtaacagcgtatg cgatttgatgactagatgcgaggaatgtggtagttggatcaccaagcgtttgaaacctgtccataaatgtgccgataaaa atcactactgcagcatctgtaaggagcaagtggaggagggacacttgtgctacgtccagaaagtgcccatccctaaaaag aaaaagaagagcgacctgtacatcttctacgatttcgagtgcacccaggaaaccggagagcatgttcccaacttctgcgt ggtacaccgggcctgtgaagcttgcatcaacctacctatcgaagattactgccagacatgttccaacctaccgggaggcg gacgcgaagtcatttttaagggggagaccaccctggaccaattcatggtttggttatttaacacctgtaccaatgacggt aaacacaagaaaatgtgtcatgagggagccacagccatcgcccacaacatgaagggatacgacggccaattcatcctaca ctttttggtgaaccgagcctgcattaaaccagatgtactgatgaatggcgccaagattatgacgatgtctgcgcacggtg tgaggtttgtggattcctacaacttcctacccgatgccttgagccgtctaccatctgcctttggactgaccgagttgaag aagggttacttccctcatctcttcaacactacagcaaaccaaaactatgtgggactgtatccacccatcgagacttacat acccgacgggatgagaggtaaagccagagaggagttcctggcctggtaccaaaacaaagtacagaggnagacaagatgcg actgtccagataagatgtggctgtccagacaagatgaggtgtccagacaagatctaactatccagacaagatgtggctat ccagacaagatgtggctgtccagacaagatgtggctgccatacaagatgcgactgtccagacaagatgtagctgtccaga caagatgtggctatacagacaagatgtggctgaccaggagtcatattttgtgctgcgaagaattttagggaaaatgaaaa cttttgaggagtccaagaaatctcagacaaaggtttcttccatgatagtcaataaaaaagacgagaagaagccggctaaa gggaaggagaataaaccagctaatgccgctaaaagcgtgaccattaaggagccagaagtttccactccagcggctccagt attaaaagagagtaacggtggtcagctagacgaagacacgataaagatgaacatagaaaagatgaagatgagatctctgg gaacagggaagaaagccaagaacggaagtccctctgccaaaagcccggaagtaaagaagaaaggaaagaaagctacagta tggaataacgcaggaaccaacaaggacttgggaacgctggattatagcggggcgggggatgattcaatggtcagcccacg taatgagactgtgtcagctgaggagctatcctgggtcggaggaatgaagggaggtttacaggatatcgaaccagaaagtg aagaagaggaagaagaagaagaggaggaggaagaagaagaggaagaagctgtccaaacaaaaactcagagtggtggatca aagacctccaggggaggagggatgttcagtatgtttaagaaccttgttggatccaagactctcactcaggaggatctggc acccgccctggaaaagatgagggaccatctcatagccaaaaacgtggccgggaacatagcggagaagttatgtagctcag taggagcaaaactcgaaggaaaagtcctaggaacgtttggatccataactaatacagtaaaatcaacattagaggaatcc tgcgtgcagatcttgttacccaaacggcgtatagacatactaagagacgcgatggacgctaagcagaagggtcgtccatt ctgtgtaacattctgtggtgttaatggagtgggcaagtctacaaatctagctaagatctgcttttggttggttgagaaca atttccgtgtactgatcgccgcctgtgacacgttcagagctggagctgttgagcagttacggacgcacgtacgtaagctg aacgcacttcaccccgcagacagacatcagggacagacgatggtacaactgtacgagaagggctatggaaaagactcggc tggaatcgctatggaggccattaactatgcacgtgattgtcgtatggacattgtactgatagatacagccggtagaatgc aggacaacgagcctctcatgagagctttgtctaagctgatcaaggtgaaccagccagacctggtcctgtttgttggtgag gctttagtcggaaatgaagctgtggatcagttaaccaagtttaaccaagccctcgccgaccattctaacatgacaaaccc caggcttatagacggcataattctcactaagtttgacactatagatgataaggtgggagcggccatttctatgacgtata ctaccggccagcctattgtatttgtgggtacggggcagacttacacagacctacgtaaccttaatgccaaggctgtggta tctgcccttctcaagtaa |
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Protein
| Protein ID | pfu_aug2.0_111.1_03653.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_111.1_03653.t1 MWLSRQEVTVQTRCDCPDKMWLSRQDVAIQTRCCCPDKMWLSRQDATVQTRCGCPDKMRLSRQDVTVQTRCGYPDKMWLS RQDVAVQTRYVTSSRRSLAVPKGYKLQTERAKALCDQAGVSSEHGCGPAEWEKFQKVLMPNYRLKIYQQNAVAKTLKFDV LYKGTVANERIQPKILHILYTDNHYDAITSMPGLVECQYYCDFCDVGYRNADSHRNACPVRCYWCLSSPPCLWEDANVEC NSCGGSFHSLRCYWNHFKPNKAGNSVCDLMTRCEECGSWITKRLKPVHKCADKNHYCSICKEQVEEGHLCYVQKVPIPKK KKKSDLYIFYDFECTQETGEHVPNFCVVHRACEACINLPIEDYCQTCSNLPGGGREVIFKGETTLDQFMVWLFNTCTNDG KHKKMCHEGATAIAHNMKGYDGQFILHFLVNRACIKPDVLMNGAKIMTMSAHGVRFVDSYNFLPDALSRLPSAFGLTELK KGYFPHLFNTTANQNYVGLYPPIETYIPDGMRGKAREEFLAWYQNKVQRXTRCDCPDKMWLSRQDEVSRQDLTIQTRCGY PDKMWLSRQDVAAIQDATVQTRCSCPDKMWLYRQDVADQESYFVLRRILGKMKTFEESKKSQTKVSSMIVNKKDEKKPAK GKENKPANAAKSVTIKEPEVSTPAAPVLKESNGGQLDEDTIKMNIEKMKMRSLGTGKKAKNGSPSAKSPEVKKKGKKATV WNNAGTNKDLGTLDYSGAGDDSMVSPRNETVSAEELSWVGGMKGGLQDIEPESEEEEEEEEEEEEEEEEAVQTKTQSGGS KTSRGGGMFSMFKNLVGSKTLTQEDLAPALEKMRDHLIAKNVAGNIAEKLCSSVGAKLEGKVLGTFGSITNTVKSTLEES CVQILLPKRRIDILRDAMDAKQKGRPFCVTFCGVNGVGKSTNLAKICFWLVENNFRVLIAACDTFRAGAVEQLRTHVRKL NALHPADRHQGQTMVQLYEKGYGKDSAGIAMEAINYARDCRMDIVLIDTAGRMQDNEPLMRALSKLIKVNQPDLVLFVGE ALVGNEAVDQLTKFNQALADHSNMTNPRLIDGIILTKFDTIDDKVGAAISMTYTTGQPIVFVGTGQTYTDLRNLNAKAVV SALLK |
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