Gene
| Gene Model ID | pfu_aug2.0_1114.1_14797 |
|---|---|
| Locus | scaffold1114.1 : 126592 ... 148765 : - |
| To GenomeBrowser | scaffold1114.1:126592..148765 |
| Genes list of scaffold | scaffold1114.1 |
| Synonym | pfu_aug1.0_8267.1_60394 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1114.1_14797.t1 | 4 | 1 | DUF159 | 55 | 279 | 1.7e-38 | 132.2 | 1.7e-39 | 6.3e-36 | 123.8 |
| pfu_aug2.0_1114.1_14797.t1 | 4 | 2 | DUF159 | 320 | 336 | 1.7e-38 | 132.2 | 0.043 | 160.0 | 1.6 |
| pfu_aug2.0_1114.1_14797.t1 | 4 | 3 | DUF159 | 337 | 354 | 1.7e-38 | 132.2 | 0.23 | 840.0 | -0.7 |
| pfu_aug2.0_1114.1_14797.t1 | 4 | 4 | DUF159 | 447 | 462 | 1.7e-38 | 132.2 | 0.98 | 3600.0 | -2.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1114.1_14797.t1 | gi|676426207|ref|XP_009044550.1| | hypothetical protein LOTGIDRAFT_211838 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1114.1_14797.t1 | gi|260807943|ref|XP_002598767.1| | hypothetical protein BRAFLDRAFT_278614 [Branchiostoma floridae] | 0.0 |
| pfu_aug2.0_1114.1_14797.t1 | gi|736212777|ref|XP_010777723.1| | PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Notothenia coriiceps] | 0.0 |
| pfu_aug2.0_1114.1_14797.t1 | gi|734636098|ref|XP_010746671.1| | PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein [Larimichthys crocea] | 0.0 |
| pfu_aug2.0_1114.1_14797.t1 | gi|395847155|ref|XP_003796249.1| | PREDICTED: embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein isoform X1 [Otolemur garnettii] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1114.1_14797.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1114.1_14797.t1 atgtgtgggaggacagcctgtacactagatccagatggtatatgtaatgcctgttcttacagcactggaaagggagggag ccaaaaaccggtatggagggaggatccaggtggacatcaatactacccctcctataacatagctcctggggcatacacag gtgacccaaagaaagtatcgtatgatacaaataattgccgggcagagggaatgctggataaaccaacgtataaagtcccc ctacataaaggcaggagatgtgtggtgctagctgatgggtttttcgaatggaagagagataataaccaaaagcagccgta tttcatctactctccacgtcagaccgaccatgttaaagaggaacctgacgaagaaactgggcctctaaagaatgatagta gtatggtctccgatggactgaggaatgaatgtgtaaatgttagaataaaggaagaaataaagactgacgaaaaatatatt cctaatggaaagagtgaggccatttcttcgtctgatgataaaacaggggtaaaaggtgaagttgaatccacagaaagtga tatcagtgaaaaaccactgctgtacatggctggtgtgtttgatatgtggaaatctcaggatggagatacaatttactcct atagcgtgataacggtagctgcttcaccagtcatgtcatggatccaccacagaatgccggccattctcacctcagatgat gaaatcaatcagtggatagactatggcaatattccaatttctcaggcagtaaagcatatcagacctataaccagtctaaa gatgcatcctgtatcgcctgtcgtcaataactcacgatgtaaagtaccagaatgtgttcaacccatagatctcaacttcg caggcgacacaagcattccttggattgctatttttataatcctagttgaattgtctcctacagaaagtgatatcgatgaa aaaccactgctgtacatggctggtgtgtttgatatgtggaaatctcaagccattctcacctcagatgaagaaatcagtca gtggatagactacggaaatattccaatttctgaggcagtaaagcatattagacctataactaatctacagatgcatcctg tatcacctatcgtcaataactcacgatgtaaagtaccagaatgtgttcaacccatagatctcaaagaaatgaagtcgcaa attggcaagacgcctagtagtcctgtatccaagggcagcagtcagatgatgatgaaatggttagcaacgggaaaaaacca gcaaccttctcccgaaaaattcctgagtgtcaagaaatctccaacaaagctgaacaaatcccagaacctgatgatgggct ggctcaaccaagggaagaggaaaagttcagaggatgaacatgaaatatcaaagaaagcaaaaatgtga |
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Protein
| Protein ID | pfu_aug2.0_1114.1_14797.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1114.1_14797.t1 MCGRTACTLDPDGICNACSYSTGKGGSQKPVWREDPGGHQYYPSYNIAPGAYTGDPKKVSYDTNNCRAEGMLDKPTYKVP LHKGRRCVVLADGFFEWKRDNNQKQPYFIYSPRQTDHVKEEPDEETGPLKNDSSMVSDGLRNECVNVRIKEEIKTDEKYI PNGKSEAISSSDDKTGVKGEVESTESDISEKPLLYMAGVFDMWKSQDGDTIYSYSVITVAASPVMSWIHHRMPAILTSDD EINQWIDYGNIPISQAVKHIRPITSLKMHPVSPVVNNSRCKVPECVQPIDLNFAGDTSIPWIAIFIILVELSPTESDIDE KPLLYMAGVFDMWKSQAILTSDEEISQWIDYGNIPISEAVKHIRPITNLQMHPVSPIVNNSRCKVPECVQPIDLKEMKSQ IGKTPSSPVSKGSSQMMMKWLATGKNQQPSPEKFLSVKKSPTKLNKSQNLMMGWLNQGKRKSSEDEHEISKKAKM |
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