Gene
| Gene Model ID | pfu_aug2.0_1115.1_18102 |
|---|---|
| Locus | scaffold1115.1 : 135479 ... 168125 : - |
| To GenomeBrowser | scaffold1115.1:135479..168125 |
| Genes list of scaffold | scaffold1115.1 |
| Synonym | pfu_aug1.0_844.1_65662 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| reelin isoform x1 | GO:0009966 GO:0010647 GO:0016043 GO:0016477 GO:0023056 GO:0030900 GO:0044238 GO:0044260 GO:0048468 GO:0048699 GO:0060255 GO:0065009 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1115.1_18102.t1 | 8 | 1 | EGF_2 | 26 | 35 | 7.6e-21 | 73.9 | 0.08 | 170.0 | 2.4 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 1 | BNR | 134 | 143 | 4.7e-19 | 65.0 | 0.0069 | 15.0 | 5.9 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 2 | BNR | 287 | 297 | 4.7e-19 | 65.0 | 0.0037 | 7.8 | 6.7 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 2 | EGF_2 | 367 | 393 | 7.6e-21 | 73.9 | 2.8e-08 | 5.9e-05 | 23.1 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 3 | BNR | 490 | 500 | 4.7e-19 | 65.0 | 0.00011 | 0.23 | 11.4 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 4 | BNR | 642 | 652 | 4.7e-19 | 65.0 | 0.00015 | 0.32 | 10.9 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 3 | EGF_2 | 723 | 749 | 7.6e-21 | 73.9 | 0.002 | 4.3 | 7.5 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 5 | BNR | 846 | 854 | 4.7e-19 | 65.0 | 5.0 | 11000.0 | -2.8 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 6 | BNR | 999 | 1008 | 4.7e-19 | 65.0 | 0.0006 | 1.3 | 9.1 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 4 | EGF_2 | 1084 | 1107 | 7.6e-21 | 73.9 | 1.8e-07 | 0.00038 | 20.5 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 7 | BNR | 1199 | 1209 | 4.7e-19 | 65.0 | 0.00013 | 0.28 | 11.1 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 8 | BNR | 1296 | 1305 | 4.7e-19 | 65.0 | 0.0012 | 2.6 | 8.2 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 5 | EGF_2 | 1382 | 1409 | 7.6e-21 | 73.9 | 9.8e-06 | 0.021 | 14.9 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 9 | BNR | 1518 | 1528 | 4.7e-19 | 65.0 | 0.00024 | 0.5 | 10.3 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 10 | BNR | 1670 | 1679 | 4.7e-19 | 65.0 | 0.0008 | 1.7 | 8.7 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 6 | EGF_2 | 1752 | 1778 | 7.6e-21 | 73.9 | 0.00048 | 1.0 | 9.5 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 11 | BNR | 1869 | 1877 | 4.7e-19 | 65.0 | 0.019 | 39.0 | 4.6 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 12 | BNR | 2019 | 2029 | 4.7e-19 | 65.0 | 0.0073 | 16.0 | 5.8 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 7 | EGF_2 | 2105 | 2131 | 7.6e-21 | 73.9 | 4.2e-07 | 0.00089 | 19.3 |
| pfu_aug2.0_1115.1_18102.t1 | 8 | 8 | EGF_2 | 2362 | 2388 | 7.6e-21 | 73.9 | 5.2e-07 | 0.0011 | 19.0 |
| pfu_aug2.0_1115.1_18102.t1 | 13 | 13 | BNR | 2490 | 2500 | 4.7e-19 | 65.0 | 0.38 | 800.0 | 0.6 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1115.1_18102.t1 | gi|602640360|ref|XP_007426995.1| | PREDICTED: reelin, partial [Python bivittatus] | 0.0 |
| pfu_aug2.0_1115.1_18102.t1 | gi|637305299|ref|XP_008109744.1| | PREDICTED: reelin isoform X1 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_1115.1_18102.t1 | gi|637305311|ref|XP_008109746.1| | PREDICTED: reelin isoform X4 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_1115.1_18102.t1 | gi|637305307|ref|XP_003221545.2| | PREDICTED: reelin isoform X3 [Anolis carolinensis] | 0.0 |
| pfu_aug2.0_1115.1_18102.t1 | gi|637305303|ref|XP_008109745.1| | PREDICTED: reelin isoform X2 [Anolis carolinensis] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1115.1_18102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1115.1_18102.t1 atgttaggattaatgacgatgataaggaagtgttttgtcaccatgagtgtaaactctcctctttatatacctagatgtga ctttggttactctggtaccacctgtaagcagcctgcagtgccccacctcacgtctatgttagagaactttgtggaccaat cagtgatgtcctcctccagccttatgaatgtacgaggggcgtcgcttgggtatgactgtgatgtactggcctcggggaag gcattggtgttcaacgcaggaggcccccgcaggctggtcaccacagacttcaatacaacaaataacagatatatacagtt ttacataagagttggtagtaattcagtcctgtccaagtgtccaccgcctgaccgcgcctcagagtctgttatactagact actcatgtaatgggggactcacatgggacctcatcaaagtcttcagctcagaagatatcagagacccacaagctgacatt gttatgttgcctgccaatgccaagggcccggcatgtcggtttaggttttggcagcctaaccattcagggcctgggtttga tgtctgggctattgatgggctgagcctgaatgaccagctatttaacactctaaacctaccaatggatgactacagaaata attcacaggaagtagcggtcaatcttggcaggattacggatggttattgtgacggaaggaaaagtatgagtttcatagat gagaaagtagatggagatatgagatttctgatgactgagccattacatattggaccgacctacataatgcagtttgacct agttatgggctgtaacctgatgtatgatatgacaaaggacaacctgctatatttagaatattcctcagatcatggtttga gctggtccctggtacaggagccctgcgtccctcctacatcttgtaaggagtacaaagaggggaccatatacaaaccctgg aagtacaccaagtggactcaagtcactgtcatgctgccaccctctacatggggccatgccattcgtttccgtttgcggca atctgattggtcgactacagactcttgggctgtatcgaggctgtacattggtcagcagtgtcctagcatgtgtaatggac atggaacttgcgtagaaggggtctgtcaatgtgagagtggcttcagtggggaggagtgtaaagcatcaacacctatggat tcctctatgcaggcagacttcggtctccgctatgagcctgaggaggactttaagcatatctggggaggggaggtaaccag tggtcagaaaggatgtggaactctcctatctggggaatccttatacttctctatggatggtacgagagaggtgcagacta aggattttgataccagcggtgctgattacatccagttctatatgaggataggagggagactgcctgactgtaacggtggg gacagcagggaggagggggtcatactacagtacagtaaggatggagggatcacatggcacacgctgcaagaaatggctcc taatctctatagaaccccaaaatttgtacatgtagttctacctaaggatgccaagagctctataactcgattccgttggt ggcagccgtctcactccggtgggggtcgggatcaatgggctctggatgaagttaaaataggcagctatgaaagactcagg aaaatacaggacaacttcaatgatcatgctgatgtgatggactctggtatgtggcttatagtgacagagggggtaagggg aaagtactgtcaggccagggaccccgcccttatcctagcaaatcaggaaaataataagtatgtcatcacaaaggaccttg accttgaagctgttgatgtaatccagtttaagattaatgtaggctgtagtaaccagtttagattggaccatccagtgtta ctgcagtacagccataacggtggtcagacatggagactggtccatgagccgtgttaccaggagaacgactgtgacggcct acatacagaggggactatatactactctggtccacagggctcctggcagactgtaatgatacccgtgtctgaagaagtgg ccatgcaccccgttatgtttcgatggtggcagcctggtggttatgccttcagttttgctctgaatgatgtctacataggt cccccatgtccagagaactgtcacagaaatggtctgtgtcataatgacaggtgtgaatgtttacagggatttacagatgt tgactgtgacttccttggagacagtccctatggattggtagactggtttgataatcaccacgaacccaaggatacctgga agagggttatgggaggtaaactaggactggggtgtggagtggtggattatgggaactctatgtacttcagtggagaaggt ataagggaagccgtcacagtacctcttaacacagtgcatctgaggatgctgcaattcatggtgaaaataggaggaaacgg agatgcgatcagatgtacgacacctataagtcgtaatgaaggaatcattgtggattattctaccgataatgaaataacct ggaatgttctaaagatggtggaacctcgtatacagaatgaaacaacagagtttgtaaccctggaacttccacctggagca aagacagagagaactatatttaggttctggcagcccttaggatatggagggatgcctcgagcagaatggggtctcgacag tgttattataggtgtaaacgagacaaatgttaacggcttccaggacgactttaactccatgatgcctgatcctcagaact ggttacagacagagagtgctgtacccagaatcacctgccaatcaaacggaaacgctctggaatttagtagagacaaagat ttgcggtttgctgagacacaggacttccacatctccccatcatctttccttcagtttgacattgccatggcttgtgactc cctatacagcacgttgtacggtgtaatgctggagtactcggtagacatgggacagacctggcaccctgtagtggaccagt gtacaccaccagacttccagtgtagtggttaccatctcagtagtgaatacatgtcagaacaacataaaaactggaccagg atcacagtctatctacctcctggtgctgtgtccccagccaccaggttccgatggaagcagagaagtgacattcctagggg tcatgtttgggcgttagacaatgtttacctgggtaatggatgcccttggttatgttctggacatggatactgtagggacg gacactgtgtttgtgatgctgggttctcaggtcctctatgtgaaccttctcggccattacccatgatgcttagagatgat tttaacaaggataacatagacatggagaattggagagagatatacggaggggagacctctaacatctgtggacagattgt cagcgggaaagctctcactttccatgaggaccacatgaggatgatagtgagccgtgacattgacaccactatgctggagt cggtagagttttactttaagtatggctgtaatggtaaggtgtttgactggccgagatcagagagtgtgctactacagtac tctactaatggtggaatcacatggaacttactaaaggaaatacactacacaaaccatacagactcgaggcaagatgcttt cgacatgggcagtagacaacttttacattgagcagacacacgtacagcagggatatcagccatggtgttcagacatggac caaagtctggtagacgttatgtggttaccagcgatcttgatgttggaccaatgtctgttgtacaatttgacataaatgtt ggttgtgagtcagaacccagtgagaagtatcccattcggttagagtattcagctaatggaggtaaaacatggcaccttct ggtaccaaactgtgctgagacatcgtctgctagatgttttgatgtggacctccatcctaccctgtattatggaggaacca caaagtattggaggaggattgttgtgccattagataacatctacatttgtggatctctgaggtttagatggtatcaaggt tctgtaccaagtgatgactttgcaccagagtgggcgatagacaacgtctttattggaatggcatgtatggatcactgcct gggtcatgggtcatgctcagacaccatgatgtgtacatgtgaccccagttaccacggagacagttgttaccctgaaaacc agaaaccaacttacttaaaggaagattttactgctactgacactgttattccattcagaggggaccttcccattcaaata gtatcaacaggcaagattgatgaggagaagtggcagttatggagtggtggtgttatatcagaccagtgtggtaacttagt ggccggagaatctctatatttcaacaataacggtgaacgagtgctggttaccaaggatctaaatttgtcaaaggtcagca ctgtgcagttttttattcaacttggctgtaaagtggcacctcctgaagagacaacattcccagtatatctacagtatagt accaacaacggtataacatggacgtccatagagcagtttgattttaatagggggagtaactccccttcctacgtagcttt acacttaccggagaaagctaggaccaattctacaatagtaagatggtggcagccttcactcgatggtactttcaatgatg aatgggctattgatcagatatatgtagggggagatgtgaatggtatacagcctctgtcagatgatcctatgataccaagg gaaacctcctggcttctgtaccctggtggtactgtggaggaggtgtgtggtacaccacataaagctacatgtatacactt caatggtgataccaaggtgcggtatgcagtatcagccgatgtcacggtagaggataatacgtttgtacagtttgacctgg ccatgagttgtagtcctaacaaagaatgctatgaaataaggatagaatattctcatgattttggtatcagctggaaggag ttacagcccccttgcctgccgtcagatgtggactgcggacgattttatcccggtagtacgctgtcatctgatgtacatac aggatggaatagagtcactatacctctcccttactatacaaaagctaaagctgtgagactacgttggacgcagccatcag gttatggcaaaaaccagccctgggctgtcaaccatctttacataggtaaagattgcccagactggtgtaacggtcatgga aaatgctcagagtcgggatgtgtatgtgattcaaattggggaggcactaactgtagtgagcccatagaacctctccctca atatcagtatgaaagatttgatgagactataaatagctccatgtggctgaaggtggtagggggtgaggtgaagcccgcct gtcatgtattgggtggagggaatgctctccattttaaaaaggattgcagtagattgctgatttctcatgaccttgaccta agaggagccctgtttattcagttctacttcctgtttggttgccattcttttccaaagtcacgtaaccaaggagttttagt ggatttttctgtggatggtggaagcacgtggatgccagttacagaattatactacgctctctttcagtctcctaggtttg tgacagtgaagttaccagaggcagcaaagaaaaatggagtacgttttcggtggtggcaacctttacatggaggtaaacaa gtgggagactggacaatagacaatatctacataggtggtgctgaggtgaacccaaatagtctcacttctgactttgatag tgggattaataataaggaatggcttagagatgacaatgttaatgttaatgaatattgtgaagaagataatgtagcggctg gtaccacattagctgcagaagattctgttattaccaccagagatctcaatgtaagggaaaacgatactttacaattcgag attaacgttggttgtggtcagtcatacaatagctctacagcccctgtacacttgcagtactctactgactatggagttaa atggaactacctgagtccacagtgcttacctaatgacccacaatgtaatggagggccacactcggccactatattttatg gagaccctatgggaatgtggagaaggcatatcttcaagctgtttgatctacctgtatcacgggccacacgttttcgatgg tttcagcgggcagatggtgggaatggtgatacacatacatggggactaaggaatgtctacataggaccatcttgtgccag cctctgtaacgggcacggtacctgtgaatatccacaatgcctctgtgaccctggttacactggaactgattgtggtagac tcgtcatggcaaatccaagggattacatccccttaccactgtcagcgaggacagcatccactagggtgcgctggtggcag ccattaaccaatgatggatctcagagaggtccacaatgggctctggacaatgtttatataggtggctcagaaataaatcc tagtcagattcaggtctcgtttgacgaaaatcagcctcagagagattcatcatgggagttcaatacatacagtgatgttc aggataatatatgtcagaagggagataactccttgacttgggaggaggggacaggtgtacgcagcttcacgactaaacag atgattgtacaggataattacatgctgcagttcaagattgttattggatgtgacaaccatttcaacgtatgttcaccaca cccctctgttaaacttgagtacaacaagaaccctaccacagatagatgggacctggtcaagccgctttgtctaccggatc taaacaagctaacagactgccagcccagtcattaccatcaggctagcgtgtataatgctgacggtcactcttcatggaca ctggtcactatacctcttaatgagaacttattctccagtactaccagattccgttggtcccagaatgccacagaacatga aggtccatcttgggctattgatgacatatatgtaggagaacgttgtccgagaatgtgtcactccaggggcacctgccgat ctggtcaatgcttctgcgatcgaggatactttgggaaatcctgtgaaccccagggaaatacactgataaggaagatgttt gataattttgaaggagggatatttagattttactggtcgtctatccttggaggggagataggttttgggtgtggggcgtt gttgccctacgctcatggtaaaactttatacttcaatggttgtggtagcagggaggctagaacagtggaaatggaccttt cctacgctaggaaagttatgtttgtgatacagattggttgtcgtgcccagacgcctgactgtaacgttaaaacaggctct aattctcaatacagaggggttattttacaatactccaaaaataagggtgcagagtgggagcttatagccagacatgaccc agaagattacctgaatcctaaacgagcagcgtatgacctgcctaatgatgctcaaaccaagggagttatgttccgatggt ggcaaccagtacatgggggcaaaggtcatgaccaatgggcaattgatcatgtagaaatattacaacaccatagtgctcat tcgaatattggaaataatagcggaaagaaataa |
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Protein
| Protein ID | pfu_aug2.0_1115.1_18102.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1115.1_18102.t1 MLGLMTMIRKCFVTMSVNSPLYIPRCDFGYSGTTCKQPAVPHLTSMLENFVDQSVMSSSSLMNVRGASLGYDCDVLASGK ALVFNAGGPRRLVTTDFNTTNNRYIQFYIRVGSNSVLSKCPPPDRASESVILDYSCNGGLTWDLIKVFSSEDIRDPQADI VMLPANAKGPACRFRFWQPNHSGPGFDVWAIDGLSLNDQLFNTLNLPMDDYRNNSQEVAVNLGRITDGYCDGRKSMSFID EKVDGDMRFLMTEPLHIGPTYIMQFDLVMGCNLMYDMTKDNLLYLEYSSDHGLSWSLVQEPCVPPTSCKEYKEGTIYKPW KYTKWTQVTVMLPPSTWGHAIRFRLRQSDWSTTDSWAVSRLYIGQQCPSMCNGHGTCVEGVCQCESGFSGEECKASTPMD SSMQADFGLRYEPEEDFKHIWGGEVTSGQKGCGTLLSGESLYFSMDGTREVQTKDFDTSGADYIQFYMRIGGRLPDCNGG DSREEGVILQYSKDGGITWHTLQEMAPNLYRTPKFVHVVLPKDAKSSITRFRWWQPSHSGGGRDQWALDEVKIGSYERLR KIQDNFNDHADVMDSGMWLIVTEGVRGKYCQARDPALILANQENNKYVITKDLDLEAVDVIQFKINVGCSNQFRLDHPVL LQYSHNGGQTWRLVHEPCYQENDCDGLHTEGTIYYSGPQGSWQTVMIPVSEEVAMHPVMFRWWQPGGYAFSFALNDVYIG PPCPENCHRNGLCHNDRCECLQGFTDVDCDFLGDSPYGLVDWFDNHHEPKDTWKRVMGGKLGLGCGVVDYGNSMYFSGEG IREAVTVPLNTVHLRMLQFMVKIGGNGDAIRCTTPISRNEGIIVDYSTDNEITWNVLKMVEPRIQNETTEFVTLELPPGA KTERTIFRFWQPLGYGGMPRAEWGLDSVIIGVNETNVNGFQDDFNSMMPDPQNWLQTESAVPRITCQSNGNALEFSRDKD LRFAETQDFHISPSSFLQFDIAMACDSLYSTLYGVMLEYSVDMGQTWHPVVDQCTPPDFQCSGYHLSSEYMSEQHKNWTR ITVYLPPGAVSPATRFRWKQRSDIPRGHVWALDNVYLGNGCPWLCSGHGYCRDGHCVCDAGFSGPLCEPSRPLPMMLRDD FNKDNIDMENWREIYGGETSNICGQIVSGKALTFHEDHMRMIVSRDIDTTMLESVEFYFKYGCNGKVFDWPRSESVLLQY STNGGITWNLLKEIHYTNHTDSRQDAFDMGSRQLLHXADTRTAGISAMVFRHGPKSGRRYVVTSDLDVGPMSVVQFDINV GCESEPSEKYPIRLEYSANGGKTWHLLVPNCAETSSARCFDVDLHPTLYYGGTTKYWRRIVVPLDNIYICGSLRFRWYQG SVPSDDFAPEWAIDNVFIGMACMDHCLGHGSCSDTMMCTCDPSYHGDSCYPENQKPTYLKEDFTATDTVIPFRGDLPIQI VSTGKIDEEKWQLWSGGVISDQCGNLVAGESLYFNNNGERVLVTKDLNLSKVSTVQFFIQLGCKVAPPEETTFPVYLQYS TNNGITWTSIEQFDFNRGSNSPSYVALHLPEKARTNSTIVRWWQPSLDGTFNDEWAIDQIYVGGDVNGIQPLSDDPMIPR ETSWLLYPGGTVEEVCGTPHKATCIHFNGDTKVRYAVSADVTVEDNTFVQFDLAMSCSPNKECYEIRIEYSHDFGISWKE LQPPCLPSDVDCGRFYPGSTLSSDVHTGWNRVTIPLPYYTKAKAVRLRWTQPSGYGKNQPWAVNHLYIGKDCPDWCNGHG KCSESGCVCDSNWGGTNCSEPIEPLPQYQYERFDETINSSMWLKVVGGEVKPACHVLGGGNALHFKKDCSRLLISHDLDL RGALFIQFYFLFGCHSFPKSRNQGVLVDFSVDGGSTWMPVTELYYALFQSPRFVTVKLPEAAKKNGVRFRWWQPLHGGKQ VGDWTIDNIYIGGAEVNPNSLTSDFDSGINNKEWLRDDNVNVNEYCEEDNVAAGTTLAAEDSVITTRDLNVRENDTLQFE INVGCGQSYNSSTAPVHLQYSTDYGVKWNYLSPQCLPNDPQCNGGPHSATIFYGDPMGMWRRHIFKLFDLPVSRATRFRW FQRADGGNGDTHTWGLRNVYIGPSCASLCNGHGTCEYPQCLCDPGYTGTDCGRLVMANPRDYIPLPLSARTASTRVRWWQ PLTNDGSQRGPQWALDNVYIGGSEINPSQIQVSFDENQPQRDSSWEFNTYSDVQDNICQKGDNSLTWEEGTGVRSFTTKQ MIVQDNYMLQFKIVIGCDNHFNVCSPHPSVKLEYNKNPTTDRWDLVKPLCLPDLNKLTDCQPSHYHQASVYNADGHSSWT LVTIPLNENLFSSTTRFRWSQNATEHEGPSWAIDDIYVGERCPRMCHSRGTCRSGQCFCDRGYFGKSCEPQGNTLIRKMF DNFEGGIFRFYWSSILGGEIGFGCGALLPYAHGKTLYFNGCGSREARTVEMDLSYARKVMFVIQIGCRAQTPDCNVKTGS NSQYRGVILQYSKNKGAEWELIARHDPEDYLNPKRAAYDLPNDAQTKGVMFRWWQPVHGGKGHDQWAIDHVEILQHHSAH SNIGNNSGKK |
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