Gene
| Gene Model ID | pfu_aug2.0_1115.1_18103 |
|---|---|
| Locus | scaffold1115.1 : 173887 ... 184995 : - |
| To GenomeBrowser | scaffold1115.1:173887..184995 |
| Genes list of scaffold | scaffold1115.1 |
| Synonym | pfu_aug1.0_844.1_65666 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| reelin isoform x1 | GO:0009966 GO:0010647 GO:0016043 GO:0016477 GO:0023056 GO:0030900 GO:0044238 GO:0044260 GO:0048468 GO:0048699 GO:0060255 GO:0065009 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1115.1_18103.t1 | 1 | 1 | Reeler | 49 | 153 | 2.6e-12 | 47.1 | 4.3e-16 | 6.4e-12 | 45.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1115.1_18103.t1 | gi|676468171|ref|XP_009058123.1| | hypothetical protein LOTGIDRAFT_228850 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_1115.1_18103.t1 | gi|664749496|ref|XP_008532164.1| | PREDICTED: reelin-like [Equus przewalskii] | 0.0 |
| pfu_aug2.0_1115.1_18103.t1 | gi|556975444|ref|XP_005995356.1| | PREDICTED: reelin isoform X1 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1115.1_18103.t1 | gi|556975447|ref|XP_005995357.1| | PREDICTED: reelin isoform X2 [Latimeria chalumnae] | 0.0 |
| pfu_aug2.0_1115.1_18103.t1 | gi|586554006|ref|XP_006925469.1| | PREDICTED: reelin [Pteropus alecto] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1115.1_18103.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1115.1_18103.t1 atgttaagatattttggtattttacacatccttgctgtgtgtgtagcatacaaaccatcagtaggtcctttcttcttcct gtgtaattaccatggcaacgttaacgagctgggaatagacaaaggggaggtggcagtgggcgtgtctatagagggaaacc cagacacatatgttcctggaaatttctataatgtgacggtgacatcaagtttgaattttgatggatttttcctgactggt ttgtataccttaacatctgaagcactggccaatcttagaaatcagggtttctatggtaacagcttgaatggtcagagtct gatgtgctccatggttcaccatcatatatccctgcagccccagcataagctgtctttcctttggttagccccgccctcag gaacaggatgtcttagctttcttgccactgccacccttggacaacagctcctcttcaaagataccacagtattacagatg tgtgaagctggaggatccccctcctccccactccgccctgagttagctacagtacataatgatggggtgatcctcaggga tgactttgattcatctgacaacttcagtccctccatttggatgttgacctccggtgtaaacatcagtaataactgtggta cggtgatgtacggggattcagcgctgttctgtgaatcacaaggagaacgtaggctggttacagtacctctcaatactact gcagccattgttctacagtttgctttgtcatcaggatcctgcagttctaagagcaatgatgatcaaaacattacagtatc tcttggtcttaattcttgttctgattggctcaaaattgatacagtaattccacctgagtctgataggtcagaagttcacc ttgtgcatctcccaccatggggacgaggggaggggatctgtattcaatggcagcagatttcccgcaattatgtggagact acgcctaccaccacgcctacaacaaccatcaccaacacacccaaaccaacaacaacaacaactgtctatgtaccgatctt cattcctaatgatcagccaatgatagacaacgtacagaatgaccaatcacaggcagcgtttgatggctgctgggctatag ataatgtacttgtagccaacatggcacacccccctactgtactagaggaaaactttgatcctgtagatcctggcaagtgg ctcttctttccaggggctaatatcaggcacaagtgtttgtcagaggaaaattccatgtattttaacctggccaatcagag ccataactatgtggtcagtcgtgacctagatctctctccggccgatgtgatggatgatgtaatgctagaggaacagtttg agtccaaatttcagccaggctggcagatcacagggggacgtgtggatgtggtgtgtggtatactataccaggccaactct atgatatttgatggagcaggagaaaggaaggcttgtacaccatacatggatacaaggacagctggaaatctacgcttcta ctttggatttgggagtggtgcatgtagggtgacagagacagagaaagtaaaagtatcattatacctggagaataaaaaag gacacagctacgtactgagagaactgggttataaaggattcaaggagcctcagttgatatctatacccatcaatggatac cagagacagacgtggtcccgtatctgctggttacagaagtaccataccggcctgaacaaggacgtatgggctatagacgg tgtacaagtactgccacacttccctcagagactcgaggaaaacaaaaataaagtctctcagttcagtcttaacctacagt gtggaaacaacgccaagaaaaatagttggaagcgagtgacccagcccttgccgtatgctgccatggtaccaactgttaga ttcaggtggatccaggaggagggtaccaagtcaccaaactgggcagtagatgacgtgtttattggtgattgtaaggatgg atgtagcggtcatggacaatgtttacagacaggctgcaagtaa |
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Protein
| Protein ID | pfu_aug2.0_1115.1_18103.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1115.1_18103.t1 MLRYFGILHILAVCVAYKPSVGPFFFLCNYHGNVNELGIDKGEVAVGVSIEGNPDTYVPGNFYNVTVTSSLNFDGFFLTG LYTLTSEALANLRNQGFYGNSLNGQSLMCSMVHHHISLQPQHKLSFLWLAPPSGTGCLSFLATATLGQQLLFKDTTVLQM CEAGGSPSSPLRPELATVHNDGVILRDDFDSSDNFSPSIWMLTSGVNISNNCGTVMYGDSALFCESQGERRLVTVPLNTT AAIVLQFALSSGSCSSKSNDDQNITVSLGLNSCSDWLKIDTVIPPESDRSEVHLVHLPPWGRGEGICIQWQQISRNYVET TPTTTPTTTITNTPKPTTTTTVYVPIFIPNDQPMIDNVQNDQSQAAFDGCWAIDNVLVANMAHPPTVLEENFDPVDPGKW LFFPGANIRHKCLSEENSMYFNLANQSHNYVVSRDLDLSPADVMDDVMLEEQFESKFQPGWQITGGRVDVVCGILYQANS MIFDGAGERKACTPYMDTRTAGNLRFYFGFGSGACRVTETEKVKVSLYLENKKGHSYVLRELGYKGFKEPQLISIPINGY QRQTWSRICWLQKYHTGLNKDVWAIDGVQVLPHFPQRLEENKNKVSQFSLNLQCGNNAKKNSWKRVTQPLPYAAMVPTVR FRWIQEEGTKSPNWAVDDVFIGDCKDGCSGHGQCLQTGCK |
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