Gene
| Gene Model ID | pfu_aug2.0_1125.1_18112 |
|---|---|
| Locus | scaffold1125.1 : 132582 ... 157295 : - |
| To GenomeBrowser | scaffold1125.1:132582..157295 |
| Genes list of scaffold | scaffold1125.1 |
| Synonym | pfu_aug1.0_6385.1_16912 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| u4 u6 small nuclear ribonucleoprotein prp3 isoform x1 | GO:0005634 GO:0006397 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1125.1_18112.t1 | 2 | 1 | PRP3 | 88 | 101 | 0.0 | 185.8 | 7.0 | 15000.0 | -7.8 |
| pfu_aug2.0_1125.1_18112.t1 | 2 | 2 | PRP3 | 291 | 435 | 0.0 | 185.8 | 0.0 | 0.0 | 185.8 |
| pfu_aug2.0_1125.1_18112.t1 | 3 | 1 | DUF1115 | 423 | 446 | 0.0 | 240.2 | 4.1 | 8700.0 | -3.7 |
| pfu_aug2.0_1125.1_18112.t1 | 3 | 2 | DUF1115 | 456 | 589 | 0.0 | 240.2 | 3.59994e-41 | 7.6e-38 | 129.0 |
| pfu_aug2.0_1125.1_18112.t1 | 3 | 3 | DUF1115 | 595 | 722 | 0.0 | 240.2 | 1.4e-38 | 2.9e-35 | 120.7 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1125.1_18112.t1 | gi|507968210|ref|XP_004689615.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Condylura cristata] | 0.0 |
| pfu_aug2.0_1125.1_18112.t1 | gi|586529772|ref|XP_006919801.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 isoform X1 [Pteropus alecto] | 0.0 |
| pfu_aug2.0_1125.1_18112.t1 | gi|617641061|ref|XP_007531622.1| | PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp3 [Erinaceus europaeus] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_1125.1_18112.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1125.1_18112.t1 atgtcactgtccacacgcgagtgggatgatctgaaggcgttactggacaaagccgtacacagattcctgggcttcagtga accatcgctagtaacggctgctcttaattgtatagacaaaggatatgataaacacaaaactgtcagtaaattagaagtga tattagacgacaagcaagctgaaaggtttgctgataagttatttgatgtgtgggaggattacagactggacacaaggaat cagcgaaaaaagagaaaggatggagagagggacagagaacgcgaggaatccacagataagaagaaaaggaggtttgtgga tgacaccagtgtgccccttcccgtggtacctggtccaggaaatcccagccctggacaacttactggagataagatcaagg aaatgatggccaatgcacaaaaaatgatccaggaaaggaaagctcagctcacacatgttataccacctaagcctcagttg tcccataacgagatgctgatgaacgatgccttggagaaagtcagacgagcccaggagcttcaggccagaatacagagtaa aatgtcaggaatggggccgggagttgccttaactccccttatagctactaaagatgatggtacagggtcaaaaccaactc cacttattctggatgaggagggtagaaccatcgacataaaaacaggacaagctgtacagctaaaacatcatacccctaca ctcaaggcaaacatcagggcaaagcgccgggcggagtttaagggtttgattgataaaccccccatggaggatatcggaga gagtagatactttgatcccagggtcagatgtattctggcttctgtacttgatcatttttgtttaaactttcagaaagaag gcgatataccagacattgaatggtgggatgcttatatacttagagtcgagagctatgatgggatgcctgacatagtagac ctgaataaactggagggaattaccaaccttgtagaacatcctacacaaatgaaaccacctgctgagccagataaagaacc aatagttcctgtttacttgacaaagaaagaacgtaagaaattaagacgacagaatcgacaagaggcccagaaagaactta ctgagaaaatacggctaggattaatgcctcctcctgaacctaaagttcggatggccaacttaatgagggttttagggaca gaggctgttcaggatcccacaaaagttgaggcacatgttagagcacagatggcaaaacgacaaaaagctcacgaagaagc aaatgctgcaaggaaattaacaaaagagcagagaagtgaaaaacgtgccaaaaaaataaaggaagatacctcgctaggag tacatatatcagtctatagattaagagatatatcaaacccagcaaagaagtttaaagtagaaaccaatgccaagcagctg ttcatgacgggaattgtagtgatacatagagactgtaatgtagttgtggtggaggggggtcctaaacaacagaaaaagtt ccgcagattgatgctgcatcgaattaagtggaatgaagacaaacagaaaaagtctgtcaaagtagatgatgatgacagtg attcagaagaagagtcagacaagggaaatagatgtgtacttgtatgggagggtacagcaaagagtcgagcatttggtgat gttaaattcaaaatgtgtcccactgaagcatttgcaagagaacagtttaaaaagtgtggagtggaacagtactgggactt ggcatttagtggtgcagtattacgagatatatcaaacccagcaaagaagtttaaagtagaaaccaatgccaagcagctgt tcatgactggaatcgtcgtgatacatagagactgtaatgtagttgtagtggaggggggtcctaaacaacagaaaaagttc cgcagattgatgctgcatcgaattaagtggaatgaagacaaacagaaaaagtctgtcaaagtagatgatgatgacagtga ttcagaagaagagtcagacaagggaaatagatgtgtacttgtatgggagggtacagcaaagagccgagcatttggtgatg ttaaattcaaaatgtgtcccactgaagcatttgcaagagaacagtttaaaaagtgtggagtggaacagtactgggacttg gcattcagtggtgcagtgttagaatcaacaggggatgatttatga |
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Protein
| Protein ID | pfu_aug2.0_1125.1_18112.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1125.1_18112.t1 MSLSTREWDDLKALLDKAVHRFLGFSEPSLVTAALNCIDKGYDKHKTVSKLEVILDDKQAERFADKLFDVWEDYRLDTRN QRKKRKDGERDREREESTDKKKRRFVDDTSVPLPVVPGPGNPSPGQLTGDKIKEMMANAQKMIQERKAQLTHVIPPKPQL SHNEMLMNDALEKVRRAQELQARIQSKMSGMGPGVALTPLIATKDDGTGSKPTPLILDEEGRTIDIKTGQAVQLKHHTPT LKANIRAKRRAEFKGLIDKPPMEDIGESRYFDPRVRCILASVLDHFCLNFQKEGDIPDIEWWDAYILRVESYDGMPDIVD LNKLEGITNLVEHPTQMKPPAEPDKEPIVPVYLTKKERKKLRRQNRQEAQKELTEKIRLGLMPPPEPKVRMANLMRVLGT EAVQDPTKVEAHVRAQMAKRQKAHEEANAARKLTKEQRSEKRAKKIKEDTSLGVHISVYRLRDISNPAKKFKVETNAKQL FMTGIVVIHRDCNVVVVEGGPKQQKKFRRLMLHRIKWNEDKQKKSVKVDDDDSDSEEESDKGNRCVLVWEGTAKSRAFGD VKFKMCPTEAFAREQFKKCGVEQYWDLAFSGAVLRDISNPAKKFKVETNAKQLFMTGIVVIHRDCNVVVVEGGPKQQKKF RRLMLHRIKWNEDKQKKSVKVDDDDSDSEEESDKGNRCVLVWEGTAKSRAFGDVKFKMCPTEAFAREQFKKCGVEQYWDL AFSGAVLESTGDDL |
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