Gene
| Gene Model ID | pfu_aug2.0_1125.1_18115 |
|---|---|
| Locus | scaffold1125.1 : 180326 ... 182036 : + |
| To GenomeBrowser | scaffold1125.1:180326..182036 |
| Genes list of scaffold | scaffold1125.1 |
| Synonym | NA |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_1125.1_18115.t1 | 1 | 1 | TPR_11 | 12 | 76 | 1.5e-10 | 40.5 | 1.5e-13 | 1.9e-10 | 40.2 |
| pfu_aug2.0_1125.1_18115.t1 | 2 | 1 | TPR_2 | 14 | 41 | 6.4e-06 | 25.6 | 0.00059 | 0.73 | 9.8 |
| pfu_aug2.0_1125.1_18115.t1 | 1 | 1 | TPR_12 | 15 | 73 | 5.5e-07 | 29.4 | 5.7e-10 | 7.1e-07 | 29.0 |
| pfu_aug2.0_1125.1_18115.t1 | 2 | 1 | TPR_1 | 15 | 41 | 4.8e-06 | 25.9 | 0.0036 | 4.4 | 7.0 |
| pfu_aug2.0_1125.1_18115.t1 | 2 | 2 | TPR_2 | 49 | 71 | 6.4e-06 | 25.6 | 2.3e-05 | 0.028 | 14.3 |
| pfu_aug2.0_1125.1_18115.t1 | 2 | 2 | TPR_1 | 50 | 71 | 4.8e-06 | 25.9 | 2.8e-06 | 0.0035 | 16.8 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_1125.1_18115.t1 | gi|498954592|ref|XP_004544312.1| | PREDICTED: tetratricopeptide repeat protein 28 isoform X2 [Maylandia zebra] | 7.0e-06 |
| pfu_aug2.0_1125.1_18115.t1 | gi|548354575|ref|XP_005729499.1| | PREDICTED: tetratricopeptide repeat protein 28-like isoform X3 [Pundamilia nyererei] | 7.0e-06 |
| pfu_aug2.0_1125.1_18115.t1 | gi|498954599|ref|XP_004544313.1| | 7.0e-06 | |
| pfu_aug2.0_1125.1_18115.t1 | gi|548354571|ref|XP_005729497.1| | PREDICTED: tetratricopeptide repeat protein 28-like isoform X1 [Pundamilia nyererei] | 7.0e-06 |
| pfu_aug2.0_1125.1_18115.t1 | gi|554824257|ref|XP_005922788.1| | PREDICTED: tetratricopeptide repeat protein 28-like isoform X1 [Haplochromis burtoni] | 7.0e-06 |
Transcript
| Transcript ID | pfu_aug2.0_1125.1_18115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1125.1_18115.t1 atgcagatgcttttctccgagatgcttcagaaaaagcatgaagcccaagcagcacttaacagaaatcagctgcctagagc cctaagcttatactctgatgcattgaacatagcacagaacaacttccctggacatgatgaaatccccaagcttctcagta acagagctctggtatttctcaaacgaggacagtatacagaggcgctgagggactccaagctgtgctgtgaacaattccca cactggataaaggcaagtctacttttctga |
|
Protein
| Protein ID | pfu_aug2.0_1125.1_18115.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_1125.1_18115.t1 MQMLFSEMLQKKHEAQAALNRNQLPRALSLYSDALNIAQNNFPGHDEIPKLLSNRALVFLKRGQYTEALRDSKLCCEQFP HWIKASLLF |
|