Gene
| Gene Model ID | pfu_aug2.0_113.1_10288 |
|---|---|
| Locus | scaffold113.1 : 270919 ... 284926 : + |
| To GenomeBrowser | scaffold113.1:270919..284926 |
| Genes list of scaffold | scaffold113.1 |
| Synonym | pfu_aug1.0_58.1_07340 |
Manual annotation
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_113.1_10288.t1 | 3 | 1 | A2M | 176 | 253 | 1.5e-15 | 56.5 | 1.2e-17 | 2.6e-14 | 52.5 |
| pfu_aug2.0_113.1_10288.t1 | 3 | 2 | A2M | 286 | 308 | 1.5e-15 | 56.5 | 3.5 | 7300.0 | -3.4 |
| pfu_aug2.0_113.1_10288.t1 | 1 | 1 | Thiol-ester_cl | 389 | 419 | 4.5e-18 | 64.1 | 5.3e-21 | 1.1e-17 | 62.9 |
| pfu_aug2.0_113.1_10288.t1 | 2 | 1 | Prenyltrans_2 | 411 | 507 | 2.2e-08 | 34.4 | 1.1e-05 | 0.024 | 15.0 |
| pfu_aug2.0_113.1_10288.t1 | 1 | 1 | A2M_comp | 439 | 673 | 0.0 | 209.1 | 0.0 | 0.0 | 206.2 |
| pfu_aug2.0_113.1_10288.t1 | 2 | 2 | Prenyltrans_2 | 614 | 669 | 2.2e-08 | 34.4 | 0.00022 | 0.46 | 10.9 |
| pfu_aug2.0_113.1_10288.t1 | 1 | 1 | A2M_recep | 780 | 876 | 6.0e-26 | 90.4 | 1.6e-28 | 3.3e-25 | 88.0 |
| pfu_aug2.0_113.1_10288.t1 | 3 | 3 | A2M | 846 | 872 | 1.5e-15 | 56.5 | 1.6 | 3500.0 | -2.4 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_113.1_10288.t1 | gi|676445117|ref|XP_009050651.1| | hypothetical protein LOTGIDRAFT_174075 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_113.1_10288.t1 | gi|676421640|ref|XP_009043816.1| | hypothetical protein LOTGIDRAFT_227923 [Lottia gigantea] | 0.0 |
| pfu_aug2.0_113.1_10288.t1 | gi|741878283|ref|XP_010826226.1| | PREDICTED: alpha-2-macroglobulin isoform X3, partial [Bos taurus] | 0.0 |
| pfu_aug2.0_113.1_10288.t1 | gi|449686578|ref|XP_002167697.2| | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_113.1_10288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_113.1_10288.t1 atggaagctacaatgaagttacaggcggagccgggatctgtatgctctgttggtacagtagataaaagtatgcagataat gaaacctgatcatgaaatgacggcagaaaagttttacaagttagtgagccagtaccagccctattactactacagctcat ggcaagacaacaggaagtattgtgaggaacaattaaaggaagaagtagagaagcttgagaatgatacgatgatacattac agctttaacacagaatctgtggattcaatagaggcatttaggagcttgcagcttatggtactatcaaatctccgtgtgca aacaagaccttgtaccatacgtacatacagacgttactatgaccctgtacccatgttttcttcgagaaccagaaatagag gcatgcctggacttagtggtgagaacggtgtatctatagacagaagtaatgtacaagtttctgcaggaactttagaggtt gtcgtagataaggcacagaaaaaagtgaggagttttttccctgaaacatggctgtgggaaattgaggtggttggagacac aggagagatcatgttaaagaggaaagttcccgacactataacagaatggatcggtaattctcccactgccctcagagcat tccagcctttcttcctctccttcacattaccatattctgccgttagaggagaagttgttccagttcttgtcactgtattc aactacatgtcagagtcacttacaatgcaggtggagttagagagatcgccagactttgatctgcaggtgtcagcagccac taagtatgattgtatacatggtggtgaatcatccacgttcaaatttgacatcacacctaaatctctcggaaaaatcaaga ttaatgcttctgctatatcaataacagacaatggcttctgtggaaataatgtggttcagagtacggaagccatcggagct agtgatgccgttagcagagaacttctcattgaggctgagggattggagaaggaacatacattctcatcttacatttgtcc agcagattccacgggatcactggaggagacttccataaacctcgcactgcccaccaatattgtcccagattctgcacgtg gatttgtcagtgtcattggtgatgttatgggccctgcactgtccaacctacaagatttactcagaatgccgtatggttgt ggagaacagaacatggcttcattcgctcccaacatatttgcgttacaatatctgaataatactaatcagcagacaaaatc tgtagtggaagaggccaagcgatacatgagagtcggatatcaaagacagctgaagtatcgtcatcctgatggatcgtatt ctgcttggggcggctccggtgacacgtcaggcagtatgtggctgacggccttcgtcattaaatgtttgggccaatcaaga ccttacattgaaattgacgagaaagacctcaacaagagtatagcatggtttaagcgccgtcagctggagacaggttgttt ccctaagattggctatacccacagttactaccttaaaggaggctttgctgacaggagtaatgaagctgttatgacgtcat ttgtattaatagctatgatggaagctggggtgccaagagatgaccaggccgtattggatggtattcgatgcctcgatatt cagcctttagaggacacatattcccttgctgtaatggcatacgcttactctctgtataaagtctcccatccacgcagacg tgaaactatttactgggagagacagaaggatgaagatgagaatgtaaccgtttctccctaccgatggttccgtgccccat ctgctgagattgagatcacatcgtatgccttactggccaatgtagtcaataaccaatcaaacgctgccgtaaatgccaaa cccatcgttatgtggctcagtcggcaacgtaactctcttggaggatttggatctactcaggacacaatagtggctttgca ggcattgtccagatatgctagcttggtataccagaaaggtgttaacattatggtacagatgtcagggacagggtttacct ccatgtttgagataaatgacaagaacaacctacttctacagagtaaggagttcagtaagcctataccggactctctgatg tgctctgtggcaggcaagggatgtgcttttattcaggctagtgtgaaatacaatattcctgatgagccaactggacctgc atttgatctaactactaaaatttacagatccaaggatcatgcaaaccactgtgcgaaaagaactctcaacatatgtgtta aaggacaaggtggagtcagtaacatggctatagtagatgtcaagatgcagacgggatggatacctgtcaaagattcactc aaaaagttactacaaaagagtcagaatggcggaccttcacagagcatagatttacagaagtatgaaacagacggtaacat ggtacatctgtactttgatcagcttgacactttgagacgttgcttttacttcgatgtggaacaaaacatagaggttacag atcctaaaccagcctttgttaaagtctatgattactatgaaacagacttgtccgtgacaaaacagtatgacatcaggaca acatgtggtacaaaggaggagttaccataccttaccccggaggagtacgcttatggtttactgaacacccccgtggatga gattgtacaagtcaggctaccgtctggtaggctaccatctcctcgtggatctagtagtgtatttagtcgtccaatgcgtt gtcctaagtgcctgagttacctcccctcacctgatgataagatggaggaactgatctgcagtgccagtcacatttataag atgcgtacaggaactggtgataatatgaagttgtacgctgacatgaaacctcaaaggaaggtcagaatagcaaagtttgt tacgagagaaatgaatgacgtctgtaaaggctgtgatatgatgaaaacaacgaagaaggacggatttcagaaggtgctag ttttcacagagaccggtgtatacaacagcacttccagtaagataatcttagatgataggtctaccatagttaaattgacc aaggctatagagacaatagtgttcaggagaaacaagggatgctga |
|
Protein
| Protein ID | pfu_aug2.0_113.1_10288.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_113.1_10288.t1 MEATMKLQAEPGSVCSVGTVDKSMQIMKPDHEMTAEKFYKLVSQYQPYYYYSSWQDNRKYCEEQLKEEVEKLENDTMIHY SFNTESVDSIEAFRSLQLMVLSNLRVQTRPCTIRTYRRYYDPVPMFSSRTRNRGMPGLSGENGVSIDRSNVQVSAGTLEV VVDKAQKKVRSFFPETWLWEIEVVGDTGEIMLKRKVPDTITEWIGNSPTALRAFQPFFLSFTLPYSAVRGEVVPVLVTVF NYMSESLTMQVELERSPDFDLQVSAATKYDCIHGGESSTFKFDITPKSLGKIKINASAISITDNGFCGNNVVQSTEAIGA SDAVSRELLIEAEGLEKEHTFSSYICPADSTGSLEETSINLALPTNIVPDSARGFVSVIGDVMGPALSNLQDLLRMPYGC GEQNMASFAPNIFALQYLNNTNQQTKSVVEEAKRYMRVGYQRQLKYRHPDGSYSAWGGSGDTSGSMWLTAFVIKCLGQSR PYIEIDEKDLNKSIAWFKRRQLETGCFPKIGYTHSYYLKGGFADRSNEAVMTSFVLIAMMEAGVPRDDQAVLDGIRCLDI QPLEDTYSLAVMAYAYSLYKVSHPRRRETIYWERQKDEDENVTVSPYRWFRAPSAEIEITSYALLANVVNNQSNAAVNAK PIVMWLSRQRNSLGGFGSTQDTIVALQALSRYASLVYQKGVNIMVQMSGTGFTSMFEINDKNNLLLQSKEFSKPIPDSLM CSVAGKGCAFIQASVKYNIPDEPTGPAFDLTTKIYRSKDHANHCAKRTLNICVKGQGGVSNMAIVDVKMQTGWIPVKDSL KKLLQKSQNGGPSQSIDLQKYETDGNMVHLYFDQLDTLRRCFYFDVEQNIEVTDPKPAFVKVYDYYETDLSVTKQYDIRT TCGTKEELPYLTPEEYAYGLLNTPVDEIVQVRLPSGRLPSPRGSSSVFSRPMRCPKCLSYLPSPDDKMEELICSASHIYK MRTGTGDNMKLYADMKPQRKVRIAKFVTREMNDVCKGCDMMKTTKKDGFQKVLVFTETGVYNSTSSKIILDDRSTIVKLT KAIETIVFRRNKGC |
|