Gene
| Gene Model ID | pfu_aug2.0_113.1_10301 |
|---|---|
| Locus | scaffold113.1 : 484612 ... 511010 : - |
| To GenomeBrowser | scaffold113.1:484612..511010 |
| Genes list of scaffold | scaffold113.1 |
| Synonym | pfu_aug1.0_4930.1_52403 |
Manual annotation
Annotation by Blast2GO
| Annotation | GO |
|---|---|
| zinc finger rna-binding | GO:0046872 |
Hmmer Search for Pfam
| query | Total | ID | Target | From | To | Eval | Score | cEval | iEval | Score |
|---|---|---|---|---|---|---|---|---|---|---|
| pfu_aug2.0_113.1_10301.t1 | 4 | 1 | zf-C2H2_jaz | 224 | 249 | 1.9e-09 | 37.4 | 1.3e-07 | 0.00037 | 20.5 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 1 | zf-met | 225 | 248 | 3.4e-12 | 46.1 | 6.1e-10 | 1.8e-06 | 27.9 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 2 | zf-C2H2_jaz | 272 | 279 | 1.9e-09 | 37.4 | 0.32 | 940.0 | 0.1 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 2 | zf-met | 274 | 280 | 3.4e-12 | 46.1 | 0.052 | 150.0 | 2.7 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 3 | zf-met | 418 | 442 | 3.4e-12 | 46.1 | 3.7e-09 | 1.1e-05 | 25.4 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 3 | zf-C2H2_jaz | 418 | 443 | 1.9e-09 | 37.4 | 5.3e-09 | 1.6e-05 | 24.9 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 4 | zf-met | 574 | 587 | 3.4e-12 | 46.1 | 0.72 | 2100.0 | -0.9 |
| pfu_aug2.0_113.1_10301.t1 | 4 | 4 | zf-C2H2_jaz | 575 | 586 | 1.9e-09 | 37.4 | 1.6 | 4600.0 | -2.1 |
| pfu_aug2.0_113.1_10301.t1 | 2 | 1 | DZF | 656 | 879 | 0.0 | 327.6 | 0.0 | 0.0 | 232.8 |
| pfu_aug2.0_113.1_10301.t1 | 2 | 2 | DZF | 880 | 970 | 0.0 | 327.6 | 6.1e-30 | 1.8e-26 | 93.0 |
Blast Hit to nr / sp
| query | Subject ID | Subject Name | evalue |
|---|---|---|---|
| pfu_aug2.0_113.1_10301.t1 | gi|524883002|ref|XP_005098136.1| | PREDICTED: zinc finger RNA-binding protein-like [Aplysia californica] | 0.0 |
| pfu_aug2.0_113.1_10301.t1 | gi|585706155|ref|XP_006823768.1| | PREDICTED: zinc finger RNA-binding protein-like [Saccoglossus kowalevskii] | 0.0 |
| pfu_aug2.0_113.1_10301.t1 | gi|390346258|ref|XP_801974.3| | 0.0 | |
| pfu_aug2.0_113.1_10301.t1 | gi|676448719|ref|XP_009051823.1| | hypothetical protein LOTGIDRAFT_53531, partial [Lottia gigantea] | 0.0 |
| pfu_aug2.0_113.1_10301.t1 | gi|698421898|ref|XP_009695633.1| | PREDICTED: zinc finger RNA-binding protein, partial [Cariama cristata] | 0.0 |
Transcript
| Transcript ID | pfu_aug2.0_113.1_10301.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_113.1_10301.t1 atggcacactttgtgtatccagcagccaatgcccagcctgcagcagcttaccctgctgtacagacagcttatgtggcagc agctccacaggcggcatatgccacagctgctccacgagctggacaggcctatgacagctaccaaacggcacatgccactc cacagtatgcctataccacacgcactcaagttgctgtaacgcccgcagcaacatatgaccagaaagcttactatcagcct gcggcagcagccgcagcggcagtagcagctcaagctggagccacatactctgtggcagagactcattatcatgcagccaa gccagcttactcaacgggaacaacttatcaaacaacacagcgggcagtgactacgcccaaaagtcatacccctgtccagg gggcagtgtccagtgctgccacctacgtgtatccagcatcaaacgtgactcagcctgtgacgtcatacacaacaacatcc tatgccaacacaacaactcctaccacaacatatacaggcaaaggatatgatgctgccctgtactctgctgccactacata ttatcaacaacaacaacaggctgctaaaactaccaacacttggcaggtcaaaaagacagggcagataggtaaagccaagc ccaagataccgcctaagcagccccaactccattattgtgatgtctgtaaaatcagctgtgctggtcctcagacatacaga gaacatcttgaaggtcagaaacacaagaagaaggaagcagccatgaaatctggttctggatctggatcctcgtcagggcg tggcagtcagaatcagctgaggtgtgagctgtgtgatgtactgaagttacacacacgtcttggcaagccaataccttcca ccgaccctgtagttgtatcgcccgcctctggatccacctccagtacagctaaggcagcttcagttggaacggctgctagt aagactgtggtcaaaacagtgacaactccagggccacaagtcaccaagaaagtactctctacacctaaaatcacttttgt tggtggatcaaagctacaaacactgggaacaaaggtggaggaggtcaaggtagaaccagctcctaaaactgtctctctgg atacatctaatacaagtgatgacaaatctgacagtgaggacaacctcaacattttgggagaaaaagatgtcactcctgtt ggtcatgagtatattgaagaagtgaaaaatgaacaaggaaaaacagtcagttttaactgtaaattatgtgagtgtaaatt caacgacccaaacgcaaaggaaatgcacatgaaaggcagaaggcataggcttcaatacaagaaaaaggttgatccaagcc ttcaagtggaagtgaagccaagcattcgggccaggaaaatccaagaagagaaaatacgtagacaagctcagaaagaggaa ttttggagaaggagggaacaggagcaaagatggagagaagaaatgaggatggaagaggagttatattgggaggagaggag aagatacgaggagctggagtattatgaatggcagaggagccagggtcgacctggtatacctccaccaagacctttcccac atggacctggacctatgggtatgagaagaccagattcctctgatgacagacatgtaatgtctaaacatgccagtatatat ccaaatgaagctgagcttcaggctgttcagaacattgtgtcactgtgtgagaaatccttgaaaaatgtgtcagatttcct ggcagaaagtgatatgccaaaggcaatggatgttgataagaaagaggttaaaaaagaagttgttataaagaaagaaggga cagccaagaaggagacaactcctacgaagaaggaagccactacacctgccaagaaagacactgataacaaagaaggggag aagaaggaagagccagctgtacagcgtgtattgaagggtgtaatgagagtgggtgtacttgccaagggcctgttactgca cggagatctgaatgtccatcttgttgtactgtgctcggagaaaccaactcgtactctgttagaacgtgtagctgatgcct tgccaaaacagattgctgctatcacagaagagaaatatgaggtgaagcgctgtgtggaagaggccgccatcatcgtcacc agcgataaacagccacagacttcatgtactgtaactctgacatcaccagtaatgagggagcaacaaacggaaggagaaac agtgaccgtcaaagaccctccggatgtactggacaggcagaaatgcctcgatgctctggcagcgttacggcatgctaaat ggttccaggctagagctaatggacttcagtcttgtgtggtggttatacgtatattgagagatctgtgtcagcgtgtacct acatggacacccttgaatgaatgggccatggagcttcttgttgagaagtgtgtgagtagtggaggaaccaatatgagccc tggtgatgccctacgcagagtgtttgaatgtatatcatctggattacttctaccaggtggtccaggattatatgatccat gtgagaaggatcccacagatgctgcctcctcactgaccaatcaggagagagaagacatcactgcttcagctcaggccatg gagcttcttgttgagaagtgtgtgagtagtggaggaaccaatatgagccctggtgatgccctacgcagagtgtttgaatg tatatcatctggattacttctaccaggtggtccaggattatatgatccatgtgagaaggatcccacagatgctgcctcct cactgaccaatcaggagagagaagacatcactgcttcagctcagcatgctctgaggttgatagctttccgtcagatacat aaagttttgggcatggacccactgccaacacccaaacatctacgacaaaggatgaatccccgtaaacgtaggcgtgcgga cagcagtactggagagggcgatgatgcaggagaaaagaaagacaagaaagaagatgaaatggaaacaagtgacaaatag |
|
Protein
| Protein ID | pfu_aug2.0_113.1_10301.t1 |
|---|---|
| Definition | - |
>pfu_aug2.0_113.1_10301.t1 MAHFVYPAANAQPAAAYPAVQTAYVAAAPQAAYATAAPRAGQAYDSYQTAHATPQYAYTTRTQVAVTPAATYDQKAYYQP AAAAAAAVAAQAGATYSVAETHYHAAKPAYSTGTTYQTTQRAVTTPKSHTPVQGAVSSAATYVYPASNVTQPVTSYTTTS YANTTTPTTTYTGKGYDAALYSAATTYYQQQQQAAKTTNTWQVKKTGQIGKAKPKIPPKQPQLHYCDVCKISCAGPQTYR EHLEGQKHKKKEAAMKSGSGSGSSSGRGSQNQLRCELCDVLKLHTRLGKPIPSTDPVVVSPASGSTSSTAKAASVGTAAS KTVVKTVTTPGPQVTKKVLSTPKITFVGGSKLQTLGTKVEEVKVEPAPKTVSLDTSNTSDDKSDSEDNLNILGEKDVTPV GHEYIEEVKNEQGKTVSFNCKLCECKFNDPNAKEMHMKGRRHRLQYKKKVDPSLQVEVKPSIRARKIQEEKIRRQAQKEE FWRRREQEQRWREEMRMEEELYWEERRRYEELEYYEWQRSQGRPGIPPPRPFPHGPGPMGMRRPDSSDDRHVMSKHASIY PNEAELQAVQNIVSLCEKSLKNVSDFLAESDMPKAMDVDKKEVKKEVVIKKEGTAKKETTPTKKEATTPAKKDTDNKEGE KKEEPAVQRVLKGVMRVGVLAKGLLLHGDLNVHLVVLCSEKPTRTLLERVADALPKQIAAITEEKYEVKRCVEEAAIIVT SDKQPQTSCTVTLTSPVMREQQTEGETVTVKDPPDVLDRQKCLDALAALRHAKWFQARANGLQSCVVVIRILRDLCQRVP TWTPLNEWAMELLVEKCVSSGGTNMSPGDALRRVFECISSGLLLPGGPGLYDPCEKDPTDAASSLTNQEREDITASAQAM ELLVEKCVSSGGTNMSPGDALRRVFECISSGLLLPGGPGLYDPCEKDPTDAASSLTNQEREDITASAQHALRLIAFRQIH KVLGMDPLPTPKHLRQRMNPRKRRRADSSTGEGDDAGEKKDKKEDEMETSDK |
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